RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 BCL9LQ86UU0 1499 aa15.08■□□□□ 0
PTPRF-212ENST00000477970 TEFQ10587 303 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 C1orf141Q5JVX7 400 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 CPDO75976 1380 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 BTBD11A6QL63 1104 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 PDE1AP54750 535 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 POLA2Q14181 598 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 LRRCC1Q9C099 1032 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 AFF2P51816 1311 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 USP26Q9BXU7 913 aa15.07■□□□□ 0
PTPRF-212ENST00000477970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.07■□□□□ 0
PTPRF-212ENST00000477970 NUTM2BA6NNL0 878 aaPredicted RBP15.06■□□□□ 0
PTPRF-212ENST00000477970 NUTM2EB1AL46 878 aaPredicted RBP15.06■□□□□ 0
PTPRF-212ENST00000477970 RAB11FIP3O75154 756 aa15.06■□□□□ 0
PTPRF-212ENST00000477970 RABEP1Q15276 862 aa15.06■□□□□ 0
PTPRF-212ENST00000477970 NUTM2AQ8IVF1 878 aaPredicted RBP15.06■□□□□ 0
PTPRF-212ENST00000477970 OTUD7AQ8TE49 926 aaPredicted RBP15.06■□□□□ 0
PTPRF-212ENST00000477970 UBTFL1P0CB47 393 aaPredicted RBP15.05■□□□□ 0
PTPRF-212ENST00000477970 IL27Q8NEV9 243 aa15.05■□□□□ 0
PTPRF-212ENST00000477970 EPB41L2O43491 1005 aaKnown RBP15.05■□□□□ -0
PTPRF-212ENST00000477970 SMARCA5O60264 1052 aaPredicted RBP15.05■□□□□ -0
PTPRF-212ENST00000477970 BEND3Q5T5X7 828 aa15.05■□□□□ -0
PTPRF-212ENST00000477970 WNK3Q9BYP7 1800 aa15.05■□□□□ -0
PTPRF-212ENST00000477970 DBF4Q9UBU7 674 aaPredicted RBP15.05■□□□□ -0
PTPRF-212ENST00000477970 ADCY9O60503 1353 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 K7ELQ4 463 aaPredicted RBP15.04■□□□□ -0
PTPRF-212ENST00000477970 PHAXQ9H814 394 aaKnown RBP15.04■□□□□ -0
PTPRF-212ENST00000477970 AXIN2Q9Y2T1 843 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 C5P01031 1676 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 GLI3P10071 1580 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 PNMA6EA0A0J9YXQ4 647 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 REC8O95072 547 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 POTEAQ6S8J7 498 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 ILDR2Q71H61 639 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 IL17RAQ96F46 866 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 LRRFIP2Q9Y608 721 aaKnown RBP15.04■□□□□ -0
PTPRF-212ENST00000477970 DNAAF4Q8WXU2 420 aa15.04■□□□□ -0
PTPRF-212ENST00000477970 ALDH1L1O75891 902 aa15.03■□□□□ -0
PTPRF-212ENST00000477970 MTX1Q13505 466 aa15.03■□□□□ -0
PTPRF-212ENST00000477970 CHPF2Q9P2E5 772 aa15.03■□□□□ -0
PTPRF-212ENST00000477970 GIGYF1O75420 1035 aaPredicted RBP15.03■□□□□ -0
PTPRF-212ENST00000477970 HDAC5Q9UQL6 1122 aa15.02■□□□□ -0
PTPRF-212ENST00000477970 ERC2O15083 957 aa15.02■□□□□ -0
PTPRF-212ENST00000477970 MX1P20591 662 aa15.02■□□□□ -0
PTPRF-212ENST00000477970 MCM4P33991 863 aa15.02■□□□□ -0
PTPRF-212ENST00000477970 MPRIPQ6WCQ1 1025 aa15.02■□□□□ -0
PTPRF-212ENST00000477970 LAMB4A4D0S4 1761 aa15.02□□□□□ -0.01
PTPRF-212ENST00000477970 C8orf37Q96NL8 207 aa15.02□□□□□ -0.01
PTPRF-212ENST00000477970 HSP90AB1P08238 724 aaKnown RBP15.01□□□□□ -0.01
PTPRF-212ENST00000477970 NECTIN2Q92692 538 aa15.01□□□□□ -0.01
PTPRF-212ENST00000477970 KDM6AO15550 1401 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-212ENST00000477970 THSD7AQ9UPZ6 1657 aa15.01□□□□□ -0.01
PTPRF-212ENST00000477970 KCNQ3O43525 872 aa15.01□□□□□ -0.01
PTPRF-212ENST00000477970 EXOC6BQ9Y2D4 811 aa15.01□□□□□ -0.01
PTPRF-212ENST00000477970 USP42Q9H9J4 1324 aaKnown RBP15.01□□□□□ -0.01
PTPRF-212ENST00000477970 AK9Q5TCS8 1911 aa15.01□□□□□ -0.01
PTPRF-212ENST00000477970 NGLY1Q96IV0 654 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 HYPKQ9NX55 129 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 UTYO14607 1347 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 ADAMTS2O95450 1211 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 HSP90AB4PQ58FF6 505 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 PTMSP20962 102 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 RAB3GAP1Q15042 981 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 CLEC17AQ6ZS10 378 aa15□□□□□ -0.01
PTPRF-212ENST00000477970 TRPC5Q9UL62 973 aaPredicted RBP15□□□□□ -0.01
PTPRF-212ENST00000477970 MEGF6O75095 1541 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 DDX11L8A8MPP1 907 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 USP21Q9UK80 565 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 ZBTB7CA1YPR0 619 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 KSR2Q6VAB6 950 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 UNC5CLQ8IV45 518 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 PI4KAP2A4QPH2 592 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 EIF2S2P20042 333 aaKnown RBP14.99□□□□□ -0.01
PTPRF-212ENST00000477970 PI4KAP1Q8N8J0 262 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 SPG7Q9UQ90 795 aa14.99□□□□□ -0.01
PTPRF-212ENST00000477970 BRWD3Q6RI45 1802 aa14.98□□□□□ -0.01
PTPRF-212ENST00000477970 CD2BP2O95400 341 aaKnown RBP14.98□□□□□ -0.01
PTPRF-212ENST00000477970 RBM6P78332 1123 aaKnown RBP14.98□□□□□ -0.01
PTPRF-212ENST00000477970 PPP1R42Q7Z4L9 355 aa14.98□□□□□ -0.01
PTPRF-212ENST00000477970 CABLES1Q8TDN4 633 aa14.98□□□□□ -0.01
PTPRF-212ENST00000477970 TATP17735 454 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-212ENST00000477970 RAPGEF4Q8WZA2 1011 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 SLC52A2Q9HAB3 445 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 DDX21Q9NR30 783 aaKnown RBP eCLIP14.97□□□□□ -0.01
PTPRF-212ENST00000477970 PHKG2P15735 406 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 VPS72Q15906 364 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 KIF1BPQ96EK5 621 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 BCL11AQ9H165 835 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 PAPPAQ13219 1627 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 APBB1O00213 710 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 ANAPC15P60006 121 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 ESYT1Q9BSJ8 1104 aa14.97□□□□□ -0.01
PTPRF-212ENST00000477970 RXRBP28702 533 aa14.96□□□□□ -0.01
PTPRF-212ENST00000477970 LMOD2Q6P5Q4 547 aa14.96□□□□□ -0.01
PTPRF-212ENST00000477970 UBR2Q8IWV8 1755 aa14.96□□□□□ -0.01
PTPRF-212ENST00000477970 QTRT2Q9H974 415 aaKnown RBP14.96□□□□□ -0.01
PTPRF-212ENST00000477970 NBPF7P0C2Y1 421 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-212ENST00000477970 RHPN1Q8TCX5 695 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 SOCS7O14512 581 aa14.95□□□□□ -0.02
PTPRF-212ENST00000477970 DDX58O95786 925 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms