RNA–Protein interactions for RNA: ENST00000473711.1

SP140-208, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 644 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-208ENST00000473711 KIF16BQ96L93 1317 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 A0A0G2JS52 829 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 MS4A1P11836 297 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 MYT1Q01538 1121 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 CCDC30Q5VVM6 783 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 ATF7IPQ6VMQ6 1270 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 DZIP1LQ8IYY4 767 aaKnown RBP13.72□□□□□ -0.21
SP140-208ENST00000473711 TTC5Q8N0Z6 440 aa13.72□□□□□ -0.21
SP140-208ENST00000473711 GJD4Q96KN9 370 aaPredicted RBP13.72□□□□□ -0.21
SP140-208ENST00000473711 VIRMAQ69YN4 1812 aaKnown RBP13.71□□□□□ -0.21
SP140-208ENST00000473711 SHANK3Q9BYB0 1731 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 GIGYF1O75420 1035 aaPredicted RBP13.71□□□□□ -0.21
SP140-208ENST00000473711 RLBP1P12271 317 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 TRIM27P14373 513 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 HDGFL1Q5TGJ6 251 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 MARCH10Q8NA82 808 aaPredicted RBP13.71□□□□□ -0.21
SP140-208ENST00000473711 STK31Q9BXU1 1019 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 QTRT2Q9H974 415 aaKnown RBP13.71□□□□□ -0.21
SP140-208ENST00000473711 TMOD3Q9NYL9 352 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 TRPC5Q9UL62 973 aaPredicted RBP13.71□□□□□ -0.21
SP140-208ENST00000473711 COG6Q9Y2V7 657 aa13.71□□□□□ -0.21
SP140-208ENST00000473711 TNS2Q63HR2 1409 aa13.71□□□□□ -0.22
SP140-208ENST00000473711 MRC1P22897 1456 aa13.7□□□□□ -0.22
SP140-208ENST00000473711 PRAMEF22A3QJZ6 481 aa13.7□□□□□ -0.22
SP140-208ENST00000473711 HOXB7P09629 217 aa13.7□□□□□ -0.22
SP140-208ENST00000473711 FTSJ3Q8IY81 847 aaKnown RBP13.7□□□□□ -0.22
SP140-208ENST00000473711 PLCD3Q8N3E9 789 aa13.7□□□□□ -0.22
SP140-208ENST00000473711 ARHGAP45Q92619 1136 aa13.7□□□□□ -0.22
SP140-208ENST00000473711 ZNF496Q96IT1 587 aaPredicted RBP13.7□□□□□ -0.22
SP140-208ENST00000473711 SIPA1L3O60292 1781 aaPredicted RBP13.7□□□□□ -0.22
SP140-208ENST00000473711 KDM3BQ7LBC6 1761 aa13.7□□□□□ -0.22
SP140-208ENST00000473711 B4GALNT3Q6L9W6 998 aa13.69□□□□□ -0.22
SP140-208ENST00000473711 POTEAQ6S8J7 498 aa13.69□□□□□ -0.22
SP140-208ENST00000473711 G2E3Q7L622 706 aa13.69□□□□□ -0.22
SP140-208ENST00000473711 PIGBQ92521 554 aa13.69□□□□□ -0.22
SP140-208ENST00000473711 SYTL4Q96C24 671 aaPredicted RBP13.69□□□□□ -0.22
SP140-208ENST00000473711 FMNL2Q96PY5 1086 aa13.69□□□□□ -0.22
SP140-208ENST00000473711 HEG1Q9ULI3 1381 aa13.69□□□□□ -0.22
SP140-208ENST00000473711 PRIM1P49642 420 aaKnown RBP13.68□□□□□ -0.22
SP140-208ENST00000473711 ACSBG1Q96GR2 724 aa13.68□□□□□ -0.22
SP140-208ENST00000473711 CHMP4AQ9BY43 222 aa13.68□□□□□ -0.22
SP140-208ENST00000473711 API5Q9BZZ5 524 aaKnown RBP13.68□□□□□ -0.22
SP140-208ENST00000473711 WNK3Q9BYP7 1800 aa13.68□□□□□ -0.22
SP140-208ENST00000473711 ATRNO75882 1429 aa13.67□□□□□ -0.22
SP140-208ENST00000473711 SNRPA1P09661 255 aaKnown RBP13.67□□□□□ -0.22
SP140-208ENST00000473711 TMEM57Q8N5G2 664 aa13.67□□□□□ -0.22
SP140-208ENST00000473711 PTCD1O75127 700 aaKnown RBP13.66□□□□□ -0.22
SP140-208ENST00000473711 MVPQ14764 893 aaKnown RBP13.66□□□□□ -0.22
SP140-208ENST00000473711 CCDC136Q96JN2 1154 aa13.66□□□□□ -0.22
SP140-208ENST00000473711 PHF12Q96QT6 1004 aa13.66□□□□□ -0.22
SP140-208ENST00000473711 ATG3Q9NT62 314 aa13.66□□□□□ -0.22
SP140-208ENST00000473711 CHPF2Q9P2E5 772 aa13.66□□□□□ -0.22
SP140-208ENST00000473711 ASAP1Q9ULH1 1129 aa13.66□□□□□ -0.22
SP140-208ENST00000473711 USP16Q9Y5T5 823 aa13.66□□□□□ -0.22
SP140-208ENST00000473711 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.66□□□□□ -0.22
SP140-208ENST00000473711 PTPRCP08575 1304 aa13.65□□□□□ -0.22
SP140-208ENST00000473711 ANXA1P04083 346 aa13.65□□□□□ -0.22
SP140-208ENST00000473711 ITPRIPQ8IWB1 547 aa13.65□□□□□ -0.22
SP140-208ENST00000473711 PHAXQ9H814 394 aaKnown RBP13.65□□□□□ -0.22
SP140-208ENST00000473711 TOGARAM1Q9Y4F4 1720 aa13.64□□□□□ -0.23
SP140-208ENST00000473711 ONECUT3O60422 494 aaPredicted RBP13.64□□□□□ -0.23
SP140-208ENST00000473711 FLIIQ13045 1269 aa13.64□□□□□ -0.23
SP140-208ENST00000473711 SEPT12Q8IYM1 358 aa13.64□□□□□ -0.23
SP140-208ENST00000473711 DBF4Q9UBU7 674 aaPredicted RBP13.64□□□□□ -0.23
SP140-208ENST00000473711 GLI3P10071 1580 aa13.63□□□□□ -0.23
SP140-208ENST00000473711 F6X3S4 739 aa13.63□□□□□ -0.23
SP140-208ENST00000473711 FKBP5Q13451 457 aaPredicted RBP13.63□□□□□ -0.23
SP140-208ENST00000473711 BCL9O00512 1426 aa13.63□□□□□ -0.23
SP140-208ENST00000473711 ABCC4O15439 1325 aa13.63□□□□□ -0.23
SP140-208ENST00000473711 KCNQ2O43526 872 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 PDIA6Q15084 440 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 PROSER3Q2NL68 480 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 FAM182BQ5T319 152 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 ZNF772Q68DY9 489 aaPredicted RBP13.62□□□□□ -0.23
SP140-208ENST00000473711 DCBLD2Q96PD2 775 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 DDX21Q9NR30 783 aaKnown RBP eCLIP13.62□□□□□ -0.23
SP140-208ENST00000473711 FBXO3Q9UK99 471 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 DDX19BQ9UMR2 479 aa13.62□□□□□ -0.23
SP140-208ENST00000473711 MYL6BP14649 208 aa13.61□□□□□ -0.23
SP140-208ENST00000473711 SLC4A10Q6U841 1118 aa13.61□□□□□ -0.23
SP140-208ENST00000473711 TSPYL2Q9H2G4 693 aaPredicted RBP13.61□□□□□ -0.23
SP140-208ENST00000473711 HYPKQ9NX55 129 aa13.61□□□□□ -0.23
SP140-208ENST00000473711 RGS12O14924 1447 aa13.6□□□□□ -0.23
SP140-208ENST00000473711 GALR2O43603 387 aaPredicted RBP13.6□□□□□ -0.23
SP140-208ENST00000473711 PIP4K2AP48426 406 aaPredicted RBP13.6□□□□□ -0.23
SP140-208ENST00000473711 INTS3Q68E01 1043 aaKnown RBP13.6□□□□□ -0.23
SP140-208ENST00000473711 ZBTB47Q9UFB7 747 aaPredicted RBP13.6□□□□□ -0.23
SP140-208ENST00000473711 ITGB4P16144 1822 aa13.6□□□□□ -0.23
SP140-208ENST00000473711 THSD7AQ9UPZ6 1657 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 KCPQ6ZWJ8 1503 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 ZBTB7BO15156 539 aaPredicted RBP13.59□□□□□ -0.23
SP140-208ENST00000473711 A1BGP04217 495 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 POTEIP0CG38 1075 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 RBM6P78332 1123 aaKnown RBP13.59□□□□□ -0.23
SP140-208ENST00000473711 AIMP1Q12904 312 aaKnown RBP13.59□□□□□ -0.23
SP140-208ENST00000473711 AAMPQ13685 434 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 DNAJC10Q8IXB1 793 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 TEX13AQ9BXU3 409 aaPredicted RBP13.59□□□□□ -0.23
SP140-208ENST00000473711 KAT6BQ8WYB5 2073 aa13.59□□□□□ -0.23
SP140-208ENST00000473711 PAPPAQ13219 1627 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms