RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-223	ENST00000473345	POTEC	B2RU33	542 aa		13.23	□□□□□ -0.29
MCF2L-223	ENST00000473345	NFKBIE	O00221	500 aa		13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	RNMT	O43148	476 aa	Known RBP	13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	TRIM26	Q12899	539 aa	Predicted RBP	13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	C1orf141	Q5JVX7	400 aa		13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	MORC1	Q86VD1	984 aa		13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	SLC52A2	Q9HAB3	445 aa		13.22	□□□□□ -0.29
MCF2L-223	ENST00000473345	HMOX1	P09601	288 aa		13.21	□□□□□ -0.29
MCF2L-223	ENST00000473345	COL15A1	P39059	1388 aa		13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	FSTL1	Q12841	308 aa		13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	MTHFSD	Q2M296	383 aa	Known RBP	13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	AKAP4	Q5JQC9	854 aa		13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	CCDC24	Q8N4L8	307 aa		13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	NARF	Q9UHQ1	456 aa		13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	DLEC1	Q9Y238	1755 aa		13.2	□□□□□ -0.3
MCF2L-223	ENST00000473345	SERPINB2	P05120	415 aa		13.19	□□□□□ -0.3
MCF2L-223	ENST00000473345	ANKRD31	Q8N7Z5	1873 aa		13.19	□□□□□ -0.3
MCF2L-223	ENST00000473345	TIMELESS	Q9UNS1	1208 aa		13.18	□□□□□ -0.3
MCF2L-223	ENST00000473345	UBR2	Q8IWV8	1755 aa		13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	KDM2B	Q8NHM5	1336 aa		13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	COL11A2	P13942	1736 aa	Predicted RBP	13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	TIAM2	Q8IVF5	1701 aa		13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	ZPR1	O75312	459 aa		13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	TBC1D9B	Q66K14	1250 aa		13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.17	□□□□□ -0.3
MCF2L-223	ENST00000473345	COL3A1	P02461	1466 aa	Predicted RBP	13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	VIRMA	Q69YN4	1812 aa	Known RBP	13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	GLTPD2	A6NH11	291 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	CAPN15	O75808	1086 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	POTEI	P0CG38	1075 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	POTEJ	P0CG39	1038 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	CANX	P27824	592 aa	Known RBP	13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	EIF5	P55010	431 aa	Known RBP	13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	BICDL1	Q6ZP65	573 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	C2CD5	Q86YS7	1000 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	PCGF6	Q9BYE7	350 aa		13.16	□□□□□ -0.3
MCF2L-223	ENST00000473345	PER1	O15534	1290 aa	Predicted RBP	13.15	□□□□□ -0.3
MCF2L-223	ENST00000473345	LMNB1	P20700	586 aa		13.15	□□□□□ -0.3
MCF2L-223	ENST00000473345	SMC1B	Q8NDV3	1235 aa		13.15	□□□□□ -0.3
MCF2L-223	ENST00000473345	ZNF496	Q96IT1	587 aa	Predicted RBP	13.15	□□□□□ -0.3
MCF2L-223	ENST00000473345	KCNQ3	O43525	872 aa		13.14	□□□□□ -0.31
MCF2L-223	ENST00000473345	TTLL6	Q8N841	843 aa		13.14	□□□□□ -0.31
MCF2L-223	ENST00000473345	IL17RE	Q8NFR9	667 aa		13.14	□□□□□ -0.31
MCF2L-223	ENST00000473345	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.14	□□□□□ -0.31
MCF2L-223	ENST00000473345	KIF7	Q2M1P5	1343 aa		13.13	□□□□□ -0.31
MCF2L-223	ENST00000473345	SCN7A	Q01118	1682 aa		13.13	□□□□□ -0.31
MCF2L-223	ENST00000473345	PRR5L	Q6MZQ0	368 aa		13.13	□□□□□ -0.31
MCF2L-223	ENST00000473345	CCDC88A	Q3V6T2	1871 aa		13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	PCNT	O95613	3336 aa		13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	PRAMEF22	A3QJZ6	481 aa		13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	HSPA1A	P0DMV8	641 aa	Known RBP	13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	HSPA1B	P0DMV9	641 aa	Known RBP	13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	VEGFA	P15692	232 aa	Predicted RBP	13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	TBC1D2B	Q9UPU7	963 aa		13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	KNSTRN	Q9Y448	316 aa		13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.12	□□□□□ -0.31
MCF2L-223	ENST00000473345	C21orf2	O43822	256 aa		13.11	□□□□□ -0.31
MCF2L-223	ENST00000473345	A1BG	P04217	495 aa		13.11	□□□□□ -0.31
MCF2L-223	ENST00000473345	PIP4K2A	P48426	406 aa	Predicted RBP	13.11	□□□□□ -0.31
MCF2L-223	ENST00000473345	VSIG10	Q8N0Z9	540 aa		13.11	□□□□□ -0.31
MCF2L-223	ENST00000473345	SIPA1L3	O60292	1781 aa	Predicted RBP	13.11	□□□□□ -0.31
MCF2L-223	ENST00000473345	CLSPN	Q9HAW4	1339 aa		13.11	□□□□□ -0.31
MCF2L-223	ENST00000473345	FER1L6	Q2WGJ9	1857 aa		13.1	□□□□□ -0.31
MCF2L-223	ENST00000473345	HEG1	Q9ULI3	1381 aa		13.1	□□□□□ -0.31
MCF2L-223	ENST00000473345	CAMTA2	O94983	1202 aa		13.1	□□□□□ -0.31
MCF2L-223	ENST00000473345	CC2D1B	Q5T0F9	858 aa	Known RBP	13.1	□□□□□ -0.31
MCF2L-223	ENST00000473345	TNS4	Q8IZW8	715 aa		13.1	□□□□□ -0.31
MCF2L-223	ENST00000473345	SLX4	Q8IY92	1834 aa		13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345		H0YIN7	160 aa		13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345	DDN	O94850	711 aa	Predicted RBP	13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345	OLFM4	Q6UX06	510 aa		13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345	SLC51A	Q86UW1	340 aa		13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345	PHACTR3	Q96KR7	559 aa		13.09	□□□□□ -0.31
MCF2L-223	ENST00000473345	DIAPH1	O60610	1272 aa	Known RBP	13.08	□□□□□ -0.32
MCF2L-223	ENST00000473345	ZNF790	Q6PG37	636 aa		13.08	□□□□□ -0.32
MCF2L-223	ENST00000473345	C7orf43	Q8WVR3	580 aa		13.07	□□□□□ -0.32
MCF2L-223	ENST00000473345	BRIP1	Q9BX63	1249 aa		13.07	□□□□□ -0.32
MCF2L-223	ENST00000473345	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.07	□□□□□ -0.32
MCF2L-223	ENST00000473345	USP16	Q9Y5T5	823 aa		13.07	□□□□□ -0.32
MCF2L-223	ENST00000473345	CEMIP	Q8WUJ3	1361 aa		13.07	□□□□□ -0.32
MCF2L-223	ENST00000473345	SRGN	P10124	158 aa		13.06	□□□□□ -0.32
MCF2L-223	ENST00000473345	CNGB1	Q14028	1251 aa	Predicted RBP	13.06	□□□□□ -0.32
MCF2L-223	ENST00000473345	ERFE	Q4G0M1	354 aa		13.06	□□□□□ -0.32
MCF2L-223	ENST00000473345	MKRN1	Q9UHC7	482 aa	Known RBP	13.06	□□□□□ -0.32
MCF2L-223	ENST00000473345	BCOR	Q6W2J9	1755 aa		13.06	□□□□□ -0.32
MCF2L-223	ENST00000473345	LTBP3	Q9NS15	1303 aa		13.06	□□□□□ -0.32
MCF2L-223	ENST00000473345	STARD3NL	O95772	234 aa		13.05	□□□□□ -0.32
MCF2L-223	ENST00000473345	PRPF40B	Q6NWY9	871 aa	Known RBP	13.05	□□□□□ -0.32
MCF2L-223	ENST00000473345	DICER1	Q9UPY3	1922 aa	Known RBP	13.05	□□□□□ -0.32
MCF2L-223	ENST00000473345	NBPF26	B4DH59	902 aa		13.04	□□□□□ -0.32
MCF2L-223	ENST00000473345	IL6ST	P40189	918 aa	Predicted RBP	13.04	□□□□□ -0.32
MCF2L-223	ENST00000473345	NBPF10	Q6P3W6	841 aa	Known RBP	13.04	□□□□□ -0.32
MCF2L-223	ENST00000473345	TTC5	Q8N0Z6	440 aa		13.04	□□□□□ -0.32
MCF2L-223	ENST00000473345	NBPF15	Q8N660	670 aa		13.04	□□□□□ -0.32
MCF2L-223	ENST00000473345	PASK	Q96RG2	1323 aa		13.04	□□□□□ -0.32
MCF2L-223	ENST00000473345	ZNF541	Q9H0D2	1346 aa		13.04	□□□□□ -0.32

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