RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 KIFC2Q96AC6 838 aa9.4□□□□□ -0.9
CKS1B-204ENST00000471245 MKNK1Q9BUB5 465 aa9.4□□□□□ -0.9
CKS1B-204ENST00000471245 TUT1Q9H6E5 874 aaKnown RBP9.4□□□□□ -0.9
CKS1B-204ENST00000471245 BIN2Q9UBW5 565 aaPredicted RBP9.4□□□□□ -0.9
CKS1B-204ENST00000471245 RBM25P49756 843 aaKnown RBP9.39□□□□□ -0.91
CKS1B-204ENST00000471245 MARSP56192 900 aaKnown RBP9.39□□□□□ -0.91
CKS1B-204ENST00000471245 FOXK2Q01167 660 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 CLN3Q13286 438 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 MTFR1Q15390 333 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 TNS4Q8IZW8 715 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 STAG2Q8N3U4 1231 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 SCG3Q8WXD2 468 aaKnown RBP9.39□□□□□ -0.91
CKS1B-204ENST00000471245 PURBQ96QR8 312 aaKnown RBP9.39□□□□□ -0.91
CKS1B-204ENST00000471245 SEPT3Q9UH03 358 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 DACH1Q9UI36 760 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 PDS5BQ9NTI5 1447 aa9.39□□□□□ -0.91
CKS1B-204ENST00000471245 A0A1W2PRU2 124 aa9.38□□□□□ -0.91
CKS1B-204ENST00000471245 STAU1O95793 577 aaKnown RBP9.38□□□□□ -0.91
CKS1B-204ENST00000471245 GPC1P35052 558 aa9.38□□□□□ -0.91
CKS1B-204ENST00000471245 HELQQ8TDG4 1101 aa9.38□□□□□ -0.91
CKS1B-204ENST00000471245 XAGE2Q96GT9 111 aa9.38□□□□□ -0.91
CKS1B-204ENST00000471245 AGBL1Q96MI9 1066 aa9.38□□□□□ -0.91
CKS1B-204ENST00000471245 ZFP42Q96MM3 310 aa9.38□□□□□ -0.91
CKS1B-204ENST00000471245 TSPAN10Q9H1Z9 355 aaPredicted RBP9.38□□□□□ -0.91
CKS1B-204ENST00000471245 DNMT3AQ9Y6K1 912 aaPredicted RBP9.38□□□□□ -0.91
CKS1B-204ENST00000471245 BMP2P12643 396 aa9.37□□□□□ -0.91
CKS1B-204ENST00000471245 SMTNP53814 917 aa9.37□□□□□ -0.91
CKS1B-204ENST00000471245 FKBP4Q02790 459 aaKnown RBP eCLIP9.37□□□□□ -0.91
CKS1B-204ENST00000471245 ESYT1Q9BSJ8 1104 aa9.37□□□□□ -0.91
CKS1B-204ENST00000471245 SCHIP1Q9P0W5 487 aaPredicted RBP9.37□□□□□ -0.91
CKS1B-204ENST00000471245 SERTAD1Q9UHV2 236 aa9.37□□□□□ -0.91
CKS1B-204ENST00000471245 ATAD2Q6PL18 1390 aa9.37□□□□□ -0.91
CKS1B-204ENST00000471245 WDR62O43379 1518 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 A6NJY4 79 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 BMP1P13497 986 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 RNF144AP50876 292 aaPredicted RBP9.36□□□□□ -0.91
CKS1B-204ENST00000471245 RELBQ01201 579 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 ZNF428Q96B54 188 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 TRIM47Q96LD4 638 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 ARHGEF10LQ9HCE6 1279 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 HRH3Q9Y5N1 445 aa9.36□□□□□ -0.91
CKS1B-204ENST00000471245 SOS2Q07890 1332 aaPredicted RBP9.35□□□□□ -0.91
CKS1B-204ENST00000471245 RBM47A0AV96 593 aaKnown RBP9.35□□□□□ -0.91
CKS1B-204ENST00000471245 CAPN12Q6ZSI9 719 aa9.35□□□□□ -0.91
CKS1B-204ENST00000471245 SLC9A9Q8IVB4 645 aa9.35□□□□□ -0.91
CKS1B-204ENST00000471245 VTI1AQ96AJ9 217 aa9.35□□□□□ -0.91
CKS1B-204ENST00000471245 ANO2Q9NQ90 1003 aa9.35□□□□□ -0.91
CKS1B-204ENST00000471245 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.35□□□□□ -0.91
CKS1B-204ENST00000471245 MRC2Q9UBG0 1479 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 IL2RAP01589 272 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 NPR3P17342 541 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 PSMA6P60900 246 aaKnown RBP9.34□□□□□ -0.91
CKS1B-204ENST00000471245 ECM1Q16610 540 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 NOM1Q5C9Z4 860 aaKnown RBP9.34□□□□□ -0.91
CKS1B-204ENST00000471245 POTEAQ6S8J7 498 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 NBPF15Q8N660 670 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 C2orf49Q9BVC5 232 aaPredicted RBP9.34□□□□□ -0.91
CKS1B-204ENST00000471245 ZNF395Q9H8N7 513 aaPredicted RBP9.34□□□□□ -0.91
CKS1B-204ENST00000471245 RAB6BQ9NRW1 208 aa9.34□□□□□ -0.91
CKS1B-204ENST00000471245 CDK2AP1O14519 115 aa9.33□□□□□ -0.92
CKS1B-204ENST00000471245 PPP1R12BO60237 982 aaPredicted RBP9.33□□□□□ -0.92
CKS1B-204ENST00000471245 ARHGAP4P98171 946 aa9.33□□□□□ -0.92
CKS1B-204ENST00000471245 C6orf118Q5T5N4 469 aa9.33□□□□□ -0.92
CKS1B-204ENST00000471245 CNKSR1Q969H4 720 aa9.33□□□□□ -0.92
CKS1B-204ENST00000471245 NLRP3Q96P20 1036 aa9.33□□□□□ -0.92
CKS1B-204ENST00000471245 GMPR2Q9P2T1 348 aaKnown RBP9.33□□□□□ -0.92
CKS1B-204ENST00000471245 DCTN4Q9UJW0 460 aa9.33□□□□□ -0.92
CKS1B-204ENST00000471245 TTLL8A6PVC2 850 aa9.32□□□□□ -0.92
CKS1B-204ENST00000471245 E9PSI1 815 aa9.32□□□□□ -0.92
CKS1B-204ENST00000471245 TLR1Q15399 786 aa9.32□□□□□ -0.92
CKS1B-204ENST00000471245 C16orf46Q6P387 395 aa9.32□□□□□ -0.92
CKS1B-204ENST00000471245 INSM2Q96T92 566 aaPredicted RBP9.32□□□□□ -0.92
CKS1B-204ENST00000471245 GRIP2Q9C0E4 1043 aa9.32□□□□□ -0.92
CKS1B-204ENST00000471245 IQSEC3Q9UPP2 1182 aaPredicted RBP9.32□□□□□ -0.92
CKS1B-204ENST00000471245 FAM13AO94988 1023 aa9.31□□□□□ -0.92
CKS1B-204ENST00000471245 MTMR3Q13615 1198 aa9.31□□□□□ -0.92
CKS1B-204ENST00000471245 NAA30Q147X3 362 aaPredicted RBP9.31□□□□□ -0.92
CKS1B-204ENST00000471245 WDR44Q5JSH3 913 aa9.31□□□□□ -0.92
CKS1B-204ENST00000471245 NPAS4Q8IUM7 802 aa9.31□□□□□ -0.92
CKS1B-204ENST00000471245 CHMP7Q8WUX9 453 aaPredicted RBP9.31□□□□□ -0.92
CKS1B-204ENST00000471245 CHMP3Q9Y3E7 222 aa9.31□□□□□ -0.92
CKS1B-204ENST00000471245 ANKRD33BA6NCL7 494 aa9.3□□□□□ -0.92
CKS1B-204ENST00000471245 MEN1O00255 615 aa9.3□□□□□ -0.92
CKS1B-204ENST00000471245 CTSOP43234 321 aaPredicted RBP9.3□□□□□ -0.92
CKS1B-204ENST00000471245 HIRAP54198 1017 aaPredicted RBP9.3□□□□□ -0.92
CKS1B-204ENST00000471245 CENPCQ03188 943 aa9.3□□□□□ -0.92
CKS1B-204ENST00000471245 MROH2BQ7Z745 1585 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 POTECB2RU33 542 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 C11orf95C9JLR9 678 aaPredicted RBP9.29□□□□□ -0.92
CKS1B-204ENST00000471245 MAPK1P28482 360 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.29□□□□□ -0.92
CKS1B-204ENST00000471245 MYO19Q96H55 970 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 ASB16Q96NS5 453 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 FHDC1Q9C0D6 1143 aaPredicted RBP9.29□□□□□ -0.92
CKS1B-204ENST00000471245 POLMQ9NP87 494 aaPredicted RBP9.29□□□□□ -0.92
CKS1B-204ENST00000471245 RIMBP3CA6NJZ7 1639 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 RIMBP3BA6NNM3 1639 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 RIMBP3Q9UFD9 1639 aa9.29□□□□□ -0.92
CKS1B-204ENST00000471245 CADPSQ9ULU8 1353 aa9.28□□□□□ -0.92
CKS1B-204ENST00000471245 TEAD4Q15561 434 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms