RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 LMOD3Q0VAK6 560 aa17■□□□□ 0.31
COL5A1-206ENST00000465877 INTS5Q6P9B9 1019 aaKnown RBP17■□□□□ 0.31
COL5A1-206ENST00000465877 ARXQ96QS3 562 aa17■□□□□ 0.31
COL5A1-206ENST00000465877 ZBTB1Q9Y2K1 713 aa17■□□□□ 0.31
COL5A1-206ENST00000465877 RRP7AQ9Y3A4 280 aaKnown RBP17■□□□□ 0.31
COL5A1-206ENST00000465877 AFDNP55196 1824 aaKnown RBP17■□□□□ 0.31
COL5A1-206ENST00000465877 TAF7Q15545 349 aaPredicted RBP16.99■□□□□ 0.31
COL5A1-206ENST00000465877 TRAPPC3LQ5T215 181 aa16.99■□□□□ 0.31
COL5A1-206ENST00000465877 MRS2Q9HD23 443 aa16.99■□□□□ 0.31
COL5A1-206ENST00000465877 FHDC1Q9C0D6 1143 aaPredicted RBP16.98■□□□□ 0.31
COL5A1-206ENST00000465877 NRXN2Q9P2S2 1712 aa16.98■□□□□ 0.31
COL5A1-206ENST00000465877 STARD3NLO95772 234 aa16.97■□□□□ 0.31
COL5A1-206ENST00000465877 NEUROD2Q15784 382 aa16.97■□□□□ 0.31
COL5A1-206ENST00000465877 ARHGEF1Q92888 912 aaKnown RBP16.97■□□□□ 0.31
COL5A1-206ENST00000465877 USP42Q9H9J4 1324 aaKnown RBP16.96■□□□□ 0.31
COL5A1-206ENST00000465877 RFC4P35249 363 aa16.96■□□□□ 0.31
COL5A1-206ENST00000465877 PNISRQ8TF01 805 aaKnown RBP16.96■□□□□ 0.31
COL5A1-206ENST00000465877 TEX13AQ9BXU3 409 aaPredicted RBP16.96■□□□□ 0.31
COL5A1-206ENST00000465877 MIS18AQ9NYP9 233 aa16.96■□□□□ 0.31
COL5A1-206ENST00000465877 BRCA1P38398 1863 aaKnown RBP16.96■□□□□ 0.31
COL5A1-206ENST00000465877 N4BP2Q86UW6 1770 aaPredicted RBP16.95■□□□□ 0.3
COL5A1-206ENST00000465877 KLHL34Q8N239 644 aa16.95■□□□□ 0.3
COL5A1-206ENST00000465877 PRAMEF22A3QJZ6 481 aa16.94■□□□□ 0.3
COL5A1-206ENST00000465877 GYS1P13807 737 aa16.94■□□□□ 0.3
COL5A1-206ENST00000465877 SRP68Q9UHB9 627 aaKnown RBP16.94■□□□□ 0.3
COL5A1-206ENST00000465877 TRIM35Q9UPQ4 493 aa16.94■□□□□ 0.3
COL5A1-206ENST00000465877 DLEC1Q9Y238 1755 aa16.93■□□□□ 0.3
COL5A1-206ENST00000465877 APAF1O14727 1248 aa16.93■□□□□ 0.3
COL5A1-206ENST00000465877 SNRPA1P09661 255 aaKnown RBP16.93■□□□□ 0.3
COL5A1-206ENST00000465877 CANXP27824 592 aaKnown RBP16.93■□□□□ 0.3
COL5A1-206ENST00000465877 SYT17Q9BSW7 474 aa16.93■□□□□ 0.3
COL5A1-206ENST00000465877 TSPYL4Q9UJ04 414 aa16.93■□□□□ 0.3
COL5A1-206ENST00000465877 C10orf71Q711Q0 1435 aa16.93■□□□□ 0.3
COL5A1-206ENST00000465877 ANKRD36CQ5JPF3 1778 aa16.92■□□□□ 0.3
COL5A1-206ENST00000465877 NUP98P52948 1817 aa16.91■□□□□ 0.3
COL5A1-206ENST00000465877 EIF5P55010 431 aaKnown RBP16.91■□□□□ 0.3
COL5A1-206ENST00000465877 EIF4A1P60842 406 aaKnown RBP16.91■□□□□ 0.3
COL5A1-206ENST00000465877 CHD4Q14839 1912 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 A1BGP04217 495 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 MMP10P09238 476 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 IL6STP40189 918 aaPredicted RBP16.9■□□□□ 0.3
COL5A1-206ENST00000465877 NLGN1Q8N2Q7 840 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 BABAM1Q9NWV8 329 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 NARFQ9UHQ1 456 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 ZNF330Q9Y3S2 320 aaPredicted RBP16.9■□□□□ 0.3
COL5A1-206ENST00000465877 USP16Q9Y5T5 823 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 ANKRD31Q8N7Z5 1873 aa16.9■□□□□ 0.3
COL5A1-206ENST00000465877 ZPR1O75312 459 aa16.89■□□□□ 0.29
COL5A1-206ENST00000465877 PIP4K2AP48426 406 aaPredicted RBP16.89■□□□□ 0.29
COL5A1-206ENST00000465877 FKBP8Q14318 412 aa16.89■□□□□ 0.29
COL5A1-206ENST00000465877 USPL1Q5W0Q7 1092 aa16.89■□□□□ 0.29
COL5A1-206ENST00000465877 NLGN2Q8NFZ4 835 aa16.89■□□□□ 0.29
COL5A1-206ENST00000465877 COL11A2P13942 1736 aaPredicted RBP16.88■□□□□ 0.29
COL5A1-206ENST00000465877 GIGYF1O75420 1035 aaPredicted RBP16.88■□□□□ 0.29
COL5A1-206ENST00000465877 PXDNLA1KZ92 1463 aa16.87■□□□□ 0.29
COL5A1-206ENST00000465877 A0A087WZG4 1122 aa16.87■□□□□ 0.29
COL5A1-206ENST00000465877 ARFGEF1Q9Y6D6 1849 aa16.86■□□□□ 0.29
COL5A1-206ENST00000465877 CACNA1SQ13698 1873 aa16.86■□□□□ 0.29
COL5A1-206ENST00000465877 DDR1Q08345 913 aa16.86■□□□□ 0.29
COL5A1-206ENST00000465877 BCL2L12Q9HB09 334 aa16.86■□□□□ 0.29
COL5A1-206ENST00000465877 CD2APQ9Y5K6 639 aa16.86■□□□□ 0.29
COL5A1-206ENST00000465877 PARP3Q9Y6F1 533 aa16.86■□□□□ 0.29
COL5A1-206ENST00000465877 NBPF26B4DH59 902 aa16.85■□□□□ 0.29
COL5A1-206ENST00000465877 CHL1O00533 1208 aa16.85■□□□□ 0.29
COL5A1-206ENST00000465877 NBPF10Q6P3W6 841 aaKnown RBP16.85■□□□□ 0.29
COL5A1-206ENST00000465877 NPM2Q86SE8 214 aaKnown RBP16.85■□□□□ 0.29
COL5A1-206ENST00000465877 NBPF15Q8N660 670 aa16.85■□□□□ 0.29
COL5A1-206ENST00000465877 LAS1LQ9Y4W2 734 aaKnown RBP16.85■□□□□ 0.29
COL5A1-206ENST00000465877 ARFGEF2Q9Y6D5 1785 aa16.84■□□□□ 0.29
COL5A1-206ENST00000465877 CALD1Q05682 793 aaKnown RBP16.84■□□□□ 0.29
COL5A1-206ENST00000465877 CFAP44Q96MT7 982 aa16.84■□□□□ 0.29
COL5A1-206ENST00000465877 SENP3-EIF4A1A0A087X0R7 540 aa16.83■□□□□ 0.28
COL5A1-206ENST00000465877 POLRMTO00411 1230 aaKnown RBP16.83■□□□□ 0.28
COL5A1-206ENST00000465877 ERBB4Q15303 1308 aa16.83■□□□□ 0.28
COL5A1-206ENST00000465877 DZIP3Q86Y13 1208 aaKnown RBP16.83■□□□□ 0.28
COL5A1-206ENST00000465877 IFT57Q9NWB7 429 aa16.83■□□□□ 0.28
COL5A1-206ENST00000465877 TBC1D2BQ9UPU7 963 aa16.83■□□□□ 0.28
COL5A1-206ENST00000465877 CARMIL3Q8ND23 1372 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 CAMTA2O94983 1202 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 NFIXQ14938 502 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 CCDC27Q2M243 656 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 KRT24Q2M2I5 525 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 FAM9BQ8IZU0 186 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 MBIPQ9NS73 344 aa16.82■□□□□ 0.28
COL5A1-206ENST00000465877 DCAF8L1A6NGE4 600 aa16.81■□□□□ 0.28
COL5A1-206ENST00000465877 ZNF853P0CG23 659 aa16.81■□□□□ 0.28
COL5A1-206ENST00000465877 TM4SF1P30408 202 aa16.81■□□□□ 0.28
COL5A1-206ENST00000465877 GNAI1P63096 354 aa16.81■□□□□ 0.28
COL5A1-206ENST00000465877 TNRC6CQ9HCJ0 1690 aaKnown RBP16.81■□□□□ 0.28
COL5A1-206ENST00000465877 NCBP3Q53F19 620 aaKnown RBP16.79■□□□□ 0.28
COL5A1-206ENST00000465877 TBC1D9BQ66K14 1250 aa16.79■□□□□ 0.28
COL5A1-206ENST00000465877 WWC1Q8IX03 1113 aa16.79■□□□□ 0.28
COL5A1-206ENST00000465877 ATP10DQ9P241 1426 aa16.79■□□□□ 0.28
COL5A1-206ENST00000465877 HOXB7P09629 217 aa16.78■□□□□ 0.28
COL5A1-206ENST00000465877 MYL6BP14649 208 aa16.78■□□□□ 0.28
COL5A1-206ENST00000465877 EIF2S2P20042 333 aaKnown RBP16.78■□□□□ 0.28
COL5A1-206ENST00000465877 BICDL1Q6ZP65 573 aa16.78■□□□□ 0.28
COL5A1-206ENST00000465877 PELP1Q8IZL8 1130 aaKnown RBP16.78■□□□□ 0.28
COL5A1-206ENST00000465877 ZNF652Q9Y2D9 606 aa16.78■□□□□ 0.28
COL5A1-206ENST00000465877 CACNA1FO60840 1977 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms