RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 WWC3Q9ULE0 1092 aa28.95■■■□□ 2.22
LIME1-203ENST00000465591 N4BP2Q86UW6 1770 aaPredicted RBP28.95■■■□□ 2.22
LIME1-203ENST00000465591 C10orf71Q711Q0 1435 aa28.94■■■□□ 2.22
LIME1-203ENST00000465591 HTATSF1O43719 755 aaKnown RBP28.94■■■□□ 2.22
LIME1-203ENST00000465591 CANXP27824 592 aaKnown RBP28.94■■■□□ 2.22
LIME1-203ENST00000465591 FMNL2Q96PY5 1086 aa28.94■■■□□ 2.22
LIME1-203ENST00000465591 DDR1Q08345 913 aa28.93■■■□□ 2.22
LIME1-203ENST00000465591 USPL1Q5W0Q7 1092 aa28.93■■■□□ 2.22
LIME1-203ENST00000465591 MYBBP1AQ9BQG0 1328 aaKnown RBP28.93■■■□□ 2.22
LIME1-203ENST00000465591 PXDNLA1KZ92 1463 aa28.92■■■□□ 2.22
LIME1-203ENST00000465591 STARD3NLO95772 234 aa28.92■■■□□ 2.22
LIME1-203ENST00000465591 PARP3Q9Y6F1 533 aa28.91■■■□□ 2.22
LIME1-203ENST00000465591 NFE2L2Q16236 605 aa28.9■■■□□ 2.22
LIME1-203ENST00000465591 BCL2L12Q9HB09 334 aa28.9■■■□□ 2.22
LIME1-203ENST00000465591 NARFQ9UHQ1 456 aa28.9■■■□□ 2.22
LIME1-203ENST00000465591 PRAMEF22A3QJZ6 481 aa28.89■■■□□ 2.22
LIME1-203ENST00000465591 ZPR1O75312 459 aa28.89■■■□□ 2.22
LIME1-203ENST00000465591 EIF5P55010 431 aaKnown RBP28.89■■■□□ 2.22
LIME1-203ENST00000465591 NEFMP07197 916 aa28.88■■■□□ 2.21
LIME1-203ENST00000465591 TM4SF1P30408 202 aa28.88■■■□□ 2.21
LIME1-203ENST00000465591 THUMPD2Q9BTF0 503 aaKnown RBP28.88■■■□□ 2.21
LIME1-203ENST00000465591 TEX13AQ9BXU3 409 aaPredicted RBP28.88■■■□□ 2.21
LIME1-203ENST00000465591 AFDNP55196 1824 aaKnown RBP28.87■■■□□ 2.21
LIME1-203ENST00000465591 GRIN3BO60391 1043 aa28.87■■■□□ 2.21
LIME1-203ENST00000465591 A1BGP04217 495 aa28.87■■■□□ 2.21
LIME1-203ENST00000465591 MIS18AQ9NYP9 233 aa28.87■■■□□ 2.21
LIME1-203ENST00000465591 USP16Q9Y5T5 823 aa28.87■■■□□ 2.21
LIME1-203ENST00000465591 KDM3BQ7LBC6 1761 aa28.86■■■□□ 2.21
LIME1-203ENST00000465591 POLRMTO00411 1230 aaKnown RBP28.86■■■□□ 2.21
LIME1-203ENST00000465591 TAF7Q15545 349 aaPredicted RBP28.86■■■□□ 2.21
LIME1-203ENST00000465591 BRCA1P38398 1863 aaKnown RBP28.85■■■□□ 2.21
LIME1-203ENST00000465591 ZNF784Q8NCA9 323 aaPredicted RBP28.85■■■□□ 2.21
LIME1-203ENST00000465591 MAPK8IP3Q9UPT6 1336 aa28.85■■■□□ 2.21
LIME1-203ENST00000465591 A0A0G2JLW4 131 aa28.84■■■□□ 2.21
LIME1-203ENST00000465591 ZEB1P37275 1124 aaPredicted RBP28.84■■■□□ 2.21
LIME1-203ENST00000465591 NFIXQ14938 502 aa28.84■■■□□ 2.21
LIME1-203ENST00000465591 PRKRIP1Q9H875 184 aaPredicted RBP28.84■■■□□ 2.21
LIME1-203ENST00000465591 SCN7AQ01118 1682 aa28.83■■■□□ 2.21
LIME1-203ENST00000465591 PIP4K2AP48426 406 aaPredicted RBP28.83■■■□□ 2.21
LIME1-203ENST00000465591 TGFB2P61812 414 aa28.83■■■□□ 2.21
LIME1-203ENST00000465591 PNNQ9H307 717 aaKnown RBP28.83■■■□□ 2.21
LIME1-203ENST00000465591 DPEP1P16444 411 aa28.82■■■□□ 2.2
LIME1-203ENST00000465591 ZNF330Q9Y3S2 320 aaPredicted RBP28.82■■■□□ 2.2
LIME1-203ENST00000465591 NRXN2Q9P2S2 1712 aa28.82■■■□□ 2.2
LIME1-203ENST00000465591 SNRPA1P09661 255 aaKnown RBP28.81■■■□□ 2.2
LIME1-203ENST00000465591 IL6STP40189 918 aaPredicted RBP28.81■■■□□ 2.2
LIME1-203ENST00000465591 TBC1D2BQ9UPU7 963 aa28.8■■■□□ 2.2
LIME1-203ENST00000465591 A0A087WZG4 1122 aa28.79■■■□□ 2.2
LIME1-203ENST00000465591 KCNA3P22001 575 aa28.79■■■□□ 2.2
LIME1-203ENST00000465591 LAMB4A4D0S4 1761 aa28.78■■■□□ 2.2
LIME1-203ENST00000465591 CCDC146Q8IYE0 955 aa28.78■■■□□ 2.2
LIME1-203ENST00000465591 BCORQ6W2J9 1755 aa28.78■■■□□ 2.2
LIME1-203ENST00000465591 TMPOP42166 694 aaKnown RBP28.76■■■□□ 2.19
LIME1-203ENST00000465591 RIPK4P57078 832 aa28.76■■■□□ 2.19
LIME1-203ENST00000465591 NBPF26B4DH59 902 aa28.75■■■□□ 2.19
LIME1-203ENST00000465591 TBC1D9BQ66K14 1250 aa28.75■■■□□ 2.19
LIME1-203ENST00000465591 NBPF10Q6P3W6 841 aaKnown RBP28.75■■■□□ 2.19
LIME1-203ENST00000465591 BICDL1Q6ZP65 573 aa28.75■■■□□ 2.19
LIME1-203ENST00000465591 NBPF15Q8N660 670 aa28.75■■■□□ 2.19
LIME1-203ENST00000465591 RRP7AQ9Y3A4 280 aaKnown RBP28.75■■■□□ 2.19
LIME1-203ENST00000465591 CAMTA2O94983 1202 aa28.74■■■□□ 2.19
LIME1-203ENST00000465591 SERPINB2P05120 415 aa28.74■■■□□ 2.19
LIME1-203ENST00000465591 PNISRQ8TF01 805 aaKnown RBP28.74■■■□□ 2.19
LIME1-203ENST00000465591 BCS1LQ9Y276 419 aa28.74■■■□□ 2.19
LIME1-203ENST00000465591 CHRNA5P30532 468 aa28.73■■■□□ 2.19
LIME1-203ENST00000465591 EIF4A1P60842 406 aaKnown RBP28.73■■■□□ 2.19
LIME1-203ENST00000465591 ADAMTS8Q9UP79 889 aa28.73■■■□□ 2.19
LIME1-203ENST00000465591 ARFGEF1Q9Y6D6 1849 aa28.72■■■□□ 2.19
LIME1-203ENST00000465591 CARMIL3Q8ND23 1372 aa28.72■■■□□ 2.19
LIME1-203ENST00000465591 WDR43Q15061 677 aaKnown RBP eCLIP28.71■■■□□ 2.19
LIME1-203ENST00000465591 DZIP3Q86Y13 1208 aaKnown RBP28.71■■■□□ 2.19
LIME1-203ENST00000465591 ANKRD31Q8N7Z5 1873 aa28.7■■■□□ 2.19
LIME1-203ENST00000465591 GIGYF1O75420 1035 aaPredicted RBP28.7■■■□□ 2.18
LIME1-203ENST00000465591 NEUROD2Q15784 382 aa28.68■■■□□ 2.18
LIME1-203ENST00000465591 RUNDC1Q96C34 613 aa28.68■■■□□ 2.18
LIME1-203ENST00000465591 DLEC1Q9Y238 1755 aa28.67■■■□□ 2.18
LIME1-203ENST00000465591 NPM2Q86SE8 214 aaKnown RBP28.67■■■□□ 2.18
LIME1-203ENST00000465591 PIM2Q9P1W9 311 aa28.67■■■□□ 2.18
LIME1-203ENST00000465591 ADCY9O60503 1353 aa28.66■■■□□ 2.18
LIME1-203ENST00000465591 CCDC24Q8N4L8 307 aa28.65■■■□□ 2.18
LIME1-203ENST00000465591 TSPYL4Q9UJ04 414 aa28.65■■■□□ 2.18
LIME1-203ENST00000465591 TRIM35Q9UPQ4 493 aa28.65■■■□□ 2.18
LIME1-203ENST00000465591 ATP10DQ9P241 1426 aa28.64■■■□□ 2.18
LIME1-203ENST00000465591 LMOD3Q0VAK6 560 aa28.63■■■□□ 2.17
LIME1-203ENST00000465591 CCDC184Q52MB2 194 aa28.63■■■□□ 2.17
LIME1-203ENST00000465591 PRR5LQ6MZQ0 368 aa28.63■■■□□ 2.17
LIME1-203ENST00000465591 ZNF316A6NFI3 1004 aaPredicted RBP28.62■■■□□ 2.17
LIME1-203ENST00000465591 DALRD3Q5D0E6 543 aaKnown RBP28.62■■■□□ 2.17
LIME1-203ENST00000465591 COL11A2P13942 1736 aaPredicted RBP28.61■■■□□ 2.17
LIME1-203ENST00000465591 ARHGAP27Q6ZUM4 889 aa28.61■■■□□ 2.17
LIME1-203ENST00000465591 SETDB2Q96T68 719 aa28.61■■■□□ 2.17
LIME1-203ENST00000465591 HLFQ16534 295 aa28.59■■■□□ 2.17
LIME1-203ENST00000465591 CLEC4GQ6UXB4 293 aa28.59■■■□□ 2.17
LIME1-203ENST00000465591 C2CD5Q86YS7 1000 aa28.59■■■□□ 2.17
LIME1-203ENST00000465591 NGEFQ8N5V2 710 aa28.59■■■□□ 2.17
LIME1-203ENST00000465591 BABAM1Q9NWV8 329 aa28.58■■■□□ 2.17
LIME1-203ENST00000465591 NUP98P52948 1817 aa28.57■■■□□ 2.16
LIME1-203ENST00000465591 MYL6BP14649 208 aa28.56■■■□□ 2.16
LIME1-203ENST00000465591 TTLL7Q6ZT98 887 aa28.56■■■□□ 2.16
LIME1-203ENST00000465591 CHL1O00533 1208 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 154.4 ms