RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 LINC00116Q8NCU8 138 aa13.12□□□□□ -0.31
UPF2-204ENST00000460569 NECTIN2Q92692 538 aa13.12□□□□□ -0.31
UPF2-204ENST00000460569 LRRC4BQ9NT99 713 aa13.12□□□□□ -0.31
UPF2-204ENST00000460569 TUBGCP6Q96RT7 1819 aa13.11□□□□□ -0.31
UPF2-204ENST00000460569 STARD3NLO95772 234 aa13.11□□□□□ -0.31
UPF2-204ENST00000460569 PROM2Q8N271 834 aa13.11□□□□□ -0.31
UPF2-204ENST00000460569 USP16Q9Y5T5 823 aa13.11□□□□□ -0.31
UPF2-204ENST00000460569 UBR3Q6ZT12 1888 aa13.1□□□□□ -0.31
UPF2-204ENST00000460569 VAMP4O75379 141 aa13.1□□□□□ -0.31
UPF2-204ENST00000460569 CYP19A1P11511 503 aaPredicted RBP13.1□□□□□ -0.31
UPF2-204ENST00000460569 CRKLP46109 303 aaKnown RBP13.1□□□□□ -0.31
UPF2-204ENST00000460569 CACNA1FO60840 1977 aa13.1□□□□□ -0.31
UPF2-204ENST00000460569 TCERG1O14776 1098 aaKnown RBP13.09□□□□□ -0.31
UPF2-204ENST00000460569 CT47B1P0C2W7 299 aaPredicted RBP13.09□□□□□ -0.31
UPF2-204ENST00000460569 HMGB2P26583 209 aaKnown RBP13.09□□□□□ -0.31
UPF2-204ENST00000460569 CCDC30Q5VVM6 783 aa13.09□□□□□ -0.31
UPF2-204ENST00000460569 CHMP4AQ9BY43 222 aa13.09□□□□□ -0.31
UPF2-204ENST00000460569 CCDC87Q9NVE4 849 aa13.09□□□□□ -0.31
UPF2-204ENST00000460569 CNTNAP4Q9C0A0 1308 aa13.09□□□□□ -0.31
UPF2-204ENST00000460569 C4AP0C0L4 1744 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 A1BGP04217 495 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 PIP4K2AP48426 406 aaPredicted RBP13.08□□□□□ -0.32
UPF2-204ENST00000460569 AK7Q96M32 723 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 CHPF2Q9P2E5 772 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 ZBTB1Q9Y2K1 713 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 ERBB4Q15303 1308 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 QSER1Q2KHR3 1735 aa13.08□□□□□ -0.32
UPF2-204ENST00000460569 GNPATO15228 680 aa13.07□□□□□ -0.32
UPF2-204ENST00000460569 CANXP27824 592 aaKnown RBP13.07□□□□□ -0.32
UPF2-204ENST00000460569 STK31Q9BXU1 1019 aa13.07□□□□□ -0.32
UPF2-204ENST00000460569 ANXA1P04083 346 aa13.06□□□□□ -0.32
UPF2-204ENST00000460569 MYL6BP14649 208 aa13.06□□□□□ -0.32
UPF2-204ENST00000460569 ZNF827Q17R98 1081 aa13.06□□□□□ -0.32
UPF2-204ENST00000460569 PROSER3Q2NL68 480 aa13.06□□□□□ -0.32
UPF2-204ENST00000460569 RC3H1Q5TC82 1133 aaKnown RBP13.06□□□□□ -0.32
UPF2-204ENST00000460569 INTS5Q6P9B9 1019 aaKnown RBP13.06□□□□□ -0.32
UPF2-204ENST00000460569 ZNF428Q96B54 188 aa13.06□□□□□ -0.32
UPF2-204ENST00000460569 BCL2L13Q9BXK5 485 aa13.06□□□□□ -0.32
UPF2-204ENST00000460569 DBF4Q9UBU7 674 aaPredicted RBP13.06□□□□□ -0.32
UPF2-204ENST00000460569 ZNF330Q9Y3S2 320 aaPredicted RBP13.06□□□□□ -0.32
UPF2-204ENST00000460569 BCORQ6W2J9 1755 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 NBPF26B4DH59 902 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 NBPF14Q5TI25 921 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 NBPF10Q6P3W6 841 aaKnown RBP13.05□□□□□ -0.32
UPF2-204ENST00000460569 NBPF15Q8N660 670 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 SSH1Q8WYL5 1049 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 ANO8Q9HCE9 1232 aaPredicted RBP13.05□□□□□ -0.32
UPF2-204ENST00000460569 DDX21Q9NR30 783 aaKnown RBP eCLIP13.05□□□□□ -0.32
UPF2-204ENST00000460569 SMC4Q9NTJ3 1288 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 STK32BQ9NY57 414 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 SCN7AQ01118 1682 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 COL15A1P39059 1388 aa13.05□□□□□ -0.32
UPF2-204ENST00000460569 PHF14O94880 888 aa13.04□□□□□ -0.32
UPF2-204ENST00000460569 RARSP54136 660 aaKnown RBP13.04□□□□□ -0.32
UPF2-204ENST00000460569 PDIA6Q15084 440 aa13.04□□□□□ -0.32
UPF2-204ENST00000460569 ALDH1L2Q3SY69 923 aa13.04□□□□□ -0.32
UPF2-204ENST00000460569 NPM2Q86SE8 214 aaKnown RBP13.04□□□□□ -0.32
UPF2-204ENST00000460569 AKT1S1Q96B36 256 aa13.04□□□□□ -0.32
UPF2-204ENST00000460569 RTCBQ9Y3I0 505 aaKnown RBP13.04□□□□□ -0.32
UPF2-204ENST00000460569 ARFGEF2Q9Y6D5 1785 aa13.04□□□□□ -0.32
UPF2-204ENST00000460569 RPS6KA4O75676 772 aa13.03□□□□□ -0.32
UPF2-204ENST00000460569 SLC4A2P04920 1241 aa13.03□□□□□ -0.32
UPF2-204ENST00000460569 IL6STP40189 918 aaPredicted RBP13.03□□□□□ -0.32
UPF2-204ENST00000460569 HYPKQ9NX55 129 aa13.03□□□□□ -0.32
UPF2-204ENST00000460569 TFCP2L1Q9NZI6 479 aa13.03□□□□□ -0.32
UPF2-204ENST00000460569 RCAN3Q9UKA8 241 aa13.03□□□□□ -0.32
UPF2-204ENST00000460569 EIF5P55010 431 aaKnown RBP13.02□□□□□ -0.33
UPF2-204ENST00000460569 AIMP1Q12904 312 aaKnown RBP13.02□□□□□ -0.33
UPF2-204ENST00000460569 SLC15A2Q16348 729 aa13.02□□□□□ -0.33
UPF2-204ENST00000460569 SMIM5Q71RC9 77 aa13.02□□□□□ -0.33
UPF2-204ENST00000460569 AMIGO3Q86WK7 504 aa13.02□□□□□ -0.33
UPF2-204ENST00000460569 MRPL50Q8N5N7 158 aaKnown RBP13.02□□□□□ -0.33
UPF2-204ENST00000460569 ARXQ96QS3 562 aa13.02□□□□□ -0.33
UPF2-204ENST00000460569 PHAXQ9H814 394 aaKnown RBP13.02□□□□□ -0.33
UPF2-204ENST00000460569 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.01□□□□□ -0.33
UPF2-204ENST00000460569 SOCS7O14512 581 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 BCAR3O75815 825 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 CENPBP07199 599 aaPredicted RBP13.01□□□□□ -0.33
UPF2-204ENST00000460569 SSFA2P28290 1259 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 G2E3Q7L622 706 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 LRP10Q7Z4F1 713 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 XAGE3Q8WTP9 111 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 ANKRD36CQ5JPF3 1778 aa13.01□□□□□ -0.33
UPF2-204ENST00000460569 KIF16BQ96L93 1317 aa13□□□□□ -0.33
UPF2-204ENST00000460569 A0A087WZG4 1122 aa13□□□□□ -0.33
UPF2-204ENST00000460569 ADRA2BP18089 450 aa13□□□□□ -0.33
UPF2-204ENST00000460569 FLIIQ13045 1269 aa13□□□□□ -0.33
UPF2-204ENST00000460569 TRAPPC3LQ5T215 181 aa13□□□□□ -0.33
UPF2-204ENST00000460569 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
UPF2-204ENST00000460569 COPS6Q7L5N1 327 aa13□□□□□ -0.33
UPF2-204ENST00000460569 DZIP3Q86Y13 1208 aaKnown RBP13□□□□□ -0.33
UPF2-204ENST00000460569 NUP98P52948 1817 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 PNPLA7Q6ZV29 1317 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 MSH5O43196 834 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 FKBP5Q13451 457 aaPredicted RBP12.99□□□□□ -0.33
UPF2-204ENST00000460569 TTLL7Q6ZT98 887 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 FLAD1Q8NFF5 587 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 TBC1D2BQ9UPU7 963 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 AFDNP55196 1824 aaKnown RBP12.99□□□□□ -0.33
UPF2-204ENST00000460569 N4BP2Q86UW6 1770 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms