RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 U2AF2P26368 475 aaKnown RBP eCLIP15.44■□□□□ 0.062e-6■■■□□ 15.3
USP40-208ENST00000450966 TCHPQ9BT92 498 aa15.44■□□□□ 0.06
USP40-208ENST00000450966 EPB41L2O43491 1005 aaKnown RBP15.44■□□□□ 0.06
USP40-208ENST00000450966 KIF4BQ2VIQ3 1234 aa15.44■□□□□ 0.06
USP40-208ENST00000450966 CAVIN2O95810 425 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 UNC13AQ9UPW8 1703 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 WDR7Q9Y4E6 1490 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 RALYLQ86SE5 291 aaKnown RBP15.43■□□□□ 0.06
USP40-208ENST00000450966 WDR97A6NE52 1622 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 CCDC172P0C7W6 258 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 HSP90AB2PQ58FF8 381 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 NUTM1Q86Y26 1132 aa15.43■□□□□ 0.06
USP40-208ENST00000450966 BAG4O95429 457 aaKnown RBP15.42■□□□□ 0.06
USP40-208ENST00000450966 SSFA2P28290 1259 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 SEPT7Q16181 437 aaKnown RBP15.42■□□□□ 0.06
USP40-208ENST00000450966 SEPT14Q6ZU15 432 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 CCDC121Q6ZUS5 278 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 ZNF518AQ6AHZ1 1483 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 MKRN1Q9UHC7 482 aaKnown RBP15.42■□□□□ 0.06
USP40-208ENST00000450966 ZNF853P0CG23 659 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 TRMT1Q9NXH9 659 aaKnown RBP15.42■□□□□ 0.06
USP40-208ENST00000450966 DAAM2Q86T65 1068 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 CABP1Q9NZU7 370 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 TBC1D2BQ9UPU7 963 aa15.42■□□□□ 0.06
USP40-208ENST00000450966 KIF3CO14782 793 aa15.41■□□□□ 0.06
USP40-208ENST00000450966 GCKP35557 465 aa15.41■□□□□ 0.06
USP40-208ENST00000450966 ZNF530Q6P9A1 599 aaPredicted RBP15.41■□□□□ 0.06
USP40-208ENST00000450966 NEUROD6Q96NK8 337 aa15.41■□□□□ 0.06
USP40-208ENST00000450966 ZNF652Q9Y2D9 606 aa15.41■□□□□ 0.06
USP40-208ENST00000450966 PLEKHH1Q9ULM0 1364 aa15.41■□□□□ 0.06
USP40-208ENST00000450966 PLCH2O75038 1416 aa15.41■□□□□ 0.06
USP40-208ENST00000450966 SLC3A2P08195 630 aaKnown RBP15.41■□□□□ 0.06
USP40-208ENST00000450966 DNAJC21Q5F1R6 531 aaKnown RBP15.41■□□□□ 0.06
USP40-208ENST00000450966 NUDT16Q96DE0 195 aaKnown RBP15.41■□□□□ 0.06
USP40-208ENST00000450966 UBTFL1P0CB47 393 aaPredicted RBP15.4■□□□□ 0.06
USP40-208ENST00000450966 CCDC150Q8NCX0 1101 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 ERO1AQ96HE7 468 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 TUBBP07437 444 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 TXLNAP40222 546 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 SPATA32Q96LK8 384 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 SCLT1Q96NL6 688 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 PHF8Q9UPP1 1060 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 HMOX1P09601 288 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 B4GALNT4Q76KP1 1039 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 ANO10Q9NW15 660 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 VPS18Q9P253 973 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 AMOTQ4VCS5 1084 aa15.4■□□□□ 0.06
USP40-208ENST00000450966 WASHC4Q2M389 1173 aa15.39■□□□□ 0.05
USP40-208ENST00000450966 DZIP1Q86YF9 867 aaKnown RBP15.39■□□□□ 0.05
USP40-208ENST00000450966 JMYQ8N9B5 988 aa15.39■□□□□ 0.05
USP40-208ENST00000450966 STARD3NLO95772 234 aa15.39■□□□□ 0.05
USP40-208ENST00000450966 MTHFSP49914 203 aa15.39■□□□□ 0.05
USP40-208ENST00000450966 AIMP1Q12904 312 aaKnown RBP15.39■□□□□ 0.05
USP40-208ENST00000450966 CCDC114Q96M63 670 aa15.39■□□□□ 0.05
USP40-208ENST00000450966 KIF1CO43896 1103 aaKnown RBP15.38■□□□□ 0.05
USP40-208ENST00000450966 OPA1O60313 960 aa15.38■□□□□ 0.05
USP40-208ENST00000450966 XBP1P17861 261 aa15.38■□□□□ 0.05
USP40-208ENST00000450966 SH3BGRP55822 239 aaPredicted RBP15.38■□□□□ 0.05
USP40-208ENST00000450966 MAGEC2Q9UBF1 373 aaPredicted RBP15.38■□□□□ 0.05
USP40-208ENST00000450966 PCF11O94913 1555 aaKnown RBP15.38■□□□□ 0.05
USP40-208ENST00000450966 INPP5BP32019 993 aa15.38■□□□□ 0.05
USP40-208ENST00000450966 CCAR1Q8IX12 1150 aaKnown RBP15.38■□□□□ 0.05
USP40-208ENST00000450966 CDCA7LQ96GN5 454 aa15.38■□□□□ 0.05
USP40-208ENST00000450966 STK38Q15208 465 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 IMMTQ16891 758 aaKnown RBP15.37■□□□□ 0.05
USP40-208ENST00000450966 AMOTL2Q9Y2J4 779 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 SAMD1Q6SPF0 538 aaPredicted RBP15.37■□□□□ 0.05
USP40-208ENST00000450966 A6NNZ2 444 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 HIP1O00291 1037 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 ZFYP08048 801 aaPredicted RBP15.37■□□□□ 0.05
USP40-208ENST00000450966 EIF5P55010 431 aaKnown RBP15.37■□□□□ 0.05
USP40-208ENST00000450966 TUBB8Q3ZCM7 444 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.37■□□□□ 0.05
USP40-208ENST00000450966 RAPGEF6Q8TEU7 1601 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 CTAGE5O15320 804 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 ZSCAN26Q16670 478 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 LMNTD2Q8IXW0 634 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 GTF3C6Q969F1 213 aa15.37■□□□□ 0.05
USP40-208ENST00000450966 MCM6Q14566 821 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 DBN1Q16643 649 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 CFAP100Q494V2 611 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 TBC1D32Q96NH3 1257 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 NCOA1Q15788 1441 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 DDX54Q8TDD1 881 aaKnown RBP15.36■□□□□ 0.05
USP40-208ENST00000450966 FAM184BQ9ULE4 1060 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 UHRF1BP1LA0JNW5 1464 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 CCDC196A0A1B0GTZ2 297 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 NGLY1Q96IV0 654 aa15.36■□□□□ 0.05
USP40-208ENST00000450966 ZSCAN31Q96LW9 406 aaPredicted RBP15.36■□□□□ 0.05
USP40-208ENST00000450966 RPUSD2Q8IZ73 545 aaKnown RBP15.36■□□□□ 0.05
USP40-208ENST00000450966 ZNF500O60304 480 aaPredicted RBP15.35■□□□□ 0.05
USP40-208ENST00000450966 BRPF1P55201 1214 aaPredicted RBP15.35■□□□□ 0.05
USP40-208ENST00000450966 PPP2R5AQ15172 486 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 ZNF830Q96NB3 372 aaPredicted RBP15.35■□□□□ 0.05
USP40-208ENST00000450966 PTPN23Q9H3S7 1636 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 HSF2BPO75031 334 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 ANKRD1Q15327 319 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 ABCC10Q5T3U5 1492 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 WDR62O43379 1518 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 GCOM1H8Y6P7 765 aaPredicted RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms