RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 DNAAF4Q8WXU2 420 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 PPIP5K1Q6PFW1 1433 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 ZNF608Q9ULD9 1512 aaPredicted RBP10□□□□□ -0.81
PTPN3-204ENST00000446349 WAPLQ7Z5K2 1190 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 TSG101Q99816 390 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 PTCD1O75127 700 aaKnown RBP10□□□□□ -0.81
PTPN3-204ENST00000446349 MATR3P43243 847 aaKnown RBP eCLIP10□□□□□ -0.81
PTPN3-204ENST00000446349 TMEM87AQ8NBN3 555 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 C16orf71Q8IYS4 520 aaPredicted RBP10□□□□□ -0.81
PTPN3-204ENST00000446349 PDILTQ8N807 584 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 DEF6Q9H4E7 631 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 PDZRN3Q9UPQ7 1066 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 CATIPQ7Z7H3 387 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 ZCRB1Q8TBF4 217 aaKnown RBP10□□□□□ -0.81
PTPN3-204ENST00000446349 PDRG1Q9NUG6 133 aa10□□□□□ -0.81
PTPN3-204ENST00000446349 ZFYP08048 801 aaPredicted RBP9.99□□□□□ -0.81
PTPN3-204ENST00000446349 DHX37Q8IY37 1157 aaKnown RBP9.99□□□□□ -0.81
PTPN3-204ENST00000446349 LARP1BQ659C4 914 aaKnown RBP9.99□□□□□ -0.81
PTPN3-204ENST00000446349 CERS3Q8IU89 383 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 OGFOD1Q8N543 542 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 ME1P48163 572 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 PLCG2P16885 1265 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 XPCQ01831 940 aaPredicted RBP9.99□□□□□ -0.81
PTPN3-204ENST00000446349 CETN1Q12798 172 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 SETDB2Q96T68 719 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 NEBLO76041 1014 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 VPS36Q86VN1 386 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 CFAP43Q8NDM7 1665 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 WDR62O43379 1518 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 MYD88Q99836 296 aa9.99□□□□□ -0.81
PTPN3-204ENST00000446349 ATP10BO94823 1461 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 MRE11P49959 708 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 ZNF592Q92610 1267 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 TSPY26PQ9H489 355 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 ABCC2Q92887 1545 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 ANKRD24Q8TF21 1146 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 ZFYVE9O95405 1425 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 TMTC2Q8N394 836 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 AMPD3Q01432 767 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 TRIM5Q9C035 493 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 C6orf229H3BNL8 230 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 JAKMIP3Q5VZ66 844 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 HOOK2Q96ED9 719 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 TSR2Q969E8 191 aaKnown RBP9.98□□□□□ -0.81
PTPN3-204ENST00000446349 ZHX3Q9H4I2 956 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 ZNF213O14771 459 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 SYCP2Q9BX26 1530 aa9.98□□□□□ -0.81
PTPN3-204ENST00000446349 FOSBP53539 338 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 CRNKL1Q9BZJ0 848 aaKnown RBP9.97□□□□□ -0.81
PTPN3-204ENST00000446349 K7ELQ4 463 aaPredicted RBP9.97□□□□□ -0.81
PTPN3-204ENST00000446349 KIF4AO95239 1232 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 EVI5LQ96CN4 794 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 EYA3Q99504 573 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 HMG20BQ9P0W2 317 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 GOLGA6L10A6NI86 522 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 ATP2B1P20020 1258 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 GNAQP50148 359 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 NOM1Q5C9Z4 860 aaKnown RBP9.97□□□□□ -0.81
PTPN3-204ENST00000446349 FEZ1Q99689 392 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 RSPH6AQ9H0K4 717 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 DDB1Q16531 1140 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 NBPF6Q5VWK0 638 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 NBPF5PQ86XG9 351 aaPredicted RBP9.97□□□□□ -0.81
PTPN3-204ENST00000446349 NBPF4Q96M43 638 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 RBM27Q9P2N5 1060 aaKnown RBP9.97□□□□□ -0.81
PTPN3-204ENST00000446349 NLRP3Q96P20 1036 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 SERPINC1P01008 464 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 SLFN5Q08AF3 891 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 ASXL1Q8IXJ9 1541 aa9.97□□□□□ -0.81
PTPN3-204ENST00000446349 SEPT7Q16181 437 aaKnown RBP9.96□□□□□ -0.81
PTPN3-204ENST00000446349 USP37Q86T82 979 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 GTPBP4Q9BZE4 634 aaKnown RBP9.96□□□□□ -0.81
PTPN3-204ENST00000446349 TANGO6Q9C0B7 1094 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 TNMDQ9H2S6 317 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 ATP10AO60312 1499 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 ACEP12821 1306 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 BMP15O95972 392 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 MYO5CQ9NQX4 1742 aa9.96□□□□□ -0.81
PTPN3-204ENST00000446349 CTAGE5O15320 804 aa9.96□□□□□ -0.82
PTPN3-204ENST00000446349 MX1P20591 662 aa9.96□□□□□ -0.82
PTPN3-204ENST00000446349 SCLT1Q96NL6 688 aa9.96□□□□□ -0.82
PTPN3-204ENST00000446349 LMTK3Q96Q04 1460 aa9.96□□□□□ -0.82
PTPN3-204ENST00000446349 CCDC96Q2M329 555 aa9.96□□□□□ -0.82
PTPN3-204ENST00000446349 ZNF804AQ7Z570 1209 aa9.96□□□□□ -0.82
PTPN3-204ENST00000446349 AKAP4Q5JQC9 854 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 EZRP15311 586 aaKnown RBP9.95□□□□□ -0.82
PTPN3-204ENST00000446349 NASPP49321 788 aaPredicted RBP9.95□□□□□ -0.82
PTPN3-204ENST00000446349 JAKMIP1Q96N16 626 aaKnown RBP9.95□□□□□ -0.82
PTPN3-204ENST00000446349 SLC12A7Q9Y666 1083 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 ARHGEF10O15013 1369 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 KANK3Q6NY19 840 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 PAXIP1Q6ZW49 1069 aaPredicted RBP9.95□□□□□ -0.82
PTPN3-204ENST00000446349 FERMT1Q9BQL6 677 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 CNNM2Q9H8M5 875 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 IL2RBP14784 551 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 GBP2P32456 591 aaPredicted RBP9.95□□□□□ -0.82
PTPN3-204ENST00000446349 ADGBQ8N7X0 1667 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 TNNI2P48788 182 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 ANKRD2Q9GZV1 360 aa9.95□□□□□ -0.82
PTPN3-204ENST00000446349 CCDC181Q5TID7 509 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms