RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 CPA1P15085 419 aa16.46■□□□□ 0.23
HERPUD1-204ENST00000439977 ZNF445P59923 1031 aa16.46■□□□□ 0.23
HERPUD1-204ENST00000439977 CCDC173Q0VFZ6 552 aa16.46■□□□□ 0.23
HERPUD1-204ENST00000439977 ESCO1Q5FWF5 840 aa16.46■□□□□ 0.23
HERPUD1-204ENST00000439977 PHF8Q9UPP1 1060 aa16.46■□□□□ 0.23
HERPUD1-204ENST00000439977 EIF4A1P60842 406 aaKnown RBP16.46■□□□□ 0.23
HERPUD1-204ENST00000439977 PRAMEF22A3QJZ6 481 aa16.46■□□□□ 0.22
HERPUD1-204ENST00000439977 DDX54Q8TDD1 881 aaKnown RBP16.46■□□□□ 0.22
HERPUD1-204ENST00000439977 NALCNQ8IZF0 1738 aa16.45■□□□□ 0.22
HERPUD1-204ENST00000439977 PSME1Q06323 249 aa16.45■□□□□ 0.22
HERPUD1-204ENST00000439977 TEFQ10587 303 aa16.45■□□□□ 0.22
HERPUD1-204ENST00000439977 BTBD11A6QL63 1104 aa16.45■□□□□ 0.22
HERPUD1-204ENST00000439977 ZNF530Q6P9A1 599 aaPredicted RBP16.44■□□□□ 0.22
HERPUD1-204ENST00000439977 PI4K2BQ8TCG2 481 aa16.44■□□□□ 0.22
HERPUD1-204ENST00000439977 DNAAF4Q8WXU2 420 aa16.44■□□□□ 0.22
HERPUD1-204ENST00000439977 PA2G4Q9UQ80 394 aaKnown RBP16.44■□□□□ 0.22
HERPUD1-204ENST00000439977 PIK3C2AO00443 1686 aa16.44■□□□□ 0.22
HERPUD1-204ENST00000439977 BRD1O95696 1058 aa16.44■□□□□ 0.22
HERPUD1-204ENST00000439977 PROSER3Q2NL68 480 aa16.43■□□□□ 0.22
HERPUD1-204ENST00000439977 BEND3Q5T5X7 828 aa16.43■□□□□ 0.22
HERPUD1-204ENST00000439977 RASEFQ8IZ41 740 aa16.43■□□□□ 0.22
HERPUD1-204ENST00000439977 PPP1R9BQ96SB3 815 aa16.43■□□□□ 0.22
HERPUD1-204ENST00000439977 SETD1BQ9UPS6 1966 aaKnown RBP16.43■□□□□ 0.22
HERPUD1-204ENST00000439977 GADD45BO75293 160 aaPredicted RBP16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 CUL4AQ13619 759 aa16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 CWF19L2Q2TBE0 894 aaKnown RBP16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 IP6K1Q92551 441 aa16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 MCM2P49736 904 aa16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 AIMP1Q12904 312 aaKnown RBP16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 KIF1BPQ96EK5 621 aa16.42■□□□□ 0.22
HERPUD1-204ENST00000439977 POLA2Q14181 598 aa16.41■□□□□ 0.22
HERPUD1-204ENST00000439977 NWD1Q149M9 1564 aa16.41■□□□□ 0.22
HERPUD1-204ENST00000439977 HSPA4P34932 840 aa16.41■□□□□ 0.22
HERPUD1-204ENST00000439977 ANAPC15P60006 121 aa16.41■□□□□ 0.22
HERPUD1-204ENST00000439977 MPNDQ8N594 471 aa16.41■□□□□ 0.22
HERPUD1-204ENST00000439977 C9orf78Q9NZ63 289 aaPredicted RBP16.41■□□□□ 0.22
HERPUD1-204ENST00000439977 MAP3K2Q9Y2U5 619 aa16.4■□□□□ 0.22
HERPUD1-204ENST00000439977 KIF13AQ9H1H9 1805 aa16.4■□□□□ 0.22
HERPUD1-204ENST00000439977 SGSM2O43147 1006 aa16.4■□□□□ 0.22
HERPUD1-204ENST00000439977 SNX14Q9Y5W7 946 aa16.4■□□□□ 0.22
HERPUD1-204ENST00000439977 RAB11FIP3O75154 756 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 MSNP26038 577 aaKnown RBP16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 ZSCAN30Q86W11 494 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 PRKCSHP14314 528 aaPredicted RBP16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 LRSAM1Q6UWE0 723 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 KIAA1211Q6ZU35 1233 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 CNTROBQ8N137 903 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 ORAI2Q96SN7 254 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 FMN2Q9NZ56 1722 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 AK2P54819 239 aa16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.39■□□□□ 0.21
HERPUD1-204ENST00000439977 USP48Q86UV5 1035 aa16.38■□□□□ 0.21
HERPUD1-204ENST00000439977 CEMIPQ8WUJ3 1361 aa16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 INTS4Q96HW7 963 aaKnown RBP16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 LSG1Q9H089 658 aaKnown RBP16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 ADCY9O60503 1353 aa16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 CASTP20810 708 aaKnown RBP16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 PTH1RQ03431 593 aa16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 SIL1Q9H173 461 aa16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 BABAM1Q9NWV8 329 aa16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 RAD50Q92878 1312 aa16.37■□□□□ 0.21
HERPUD1-204ENST00000439977 ARHGAP23Q9P227 1491 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 LARGE1O95461 756 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 C1orf141Q5JVX7 400 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 DIAPH3Q9NSV4 1193 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 CNPY2Q9Y2B0 182 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 ADCK5Q3MIX3 580 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 RUFY3Q7L099 469 aa16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 CLASRPQ8N2M8 674 aaKnown RBP16.36■□□□□ 0.21
HERPUD1-204ENST00000439977 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 KLHDC4Q8TBB5 520 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 JARID2Q92833 1246 aaPredicted RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 DBF4Q9UBU7 674 aaPredicted RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 XRN1Q8IZH2 1706 aaKnown RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 GCP02774 474 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 COL9A3Q14050 684 aaPredicted RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 PLEKHO1Q53GL0 409 aaPredicted RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 AKAP4Q5JQC9 854 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 CCDC8Q9H0W5 538 aaPredicted RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 SLIT1O75093 1534 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 MBD3O95983 291 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 IFIT2P09913 472 aaKnown RBP16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 SLC39A6Q13433 755 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 AACSQ86V21 672 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 AXIN2Q9Y2T1 843 aa16.35■□□□□ 0.21
HERPUD1-204ENST00000439977 RNMTO43148 476 aaKnown RBP16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 PIP4K2AP48426 406 aaPredicted RBP16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 AOX1Q06278 1338 aa16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 FAM208AQ9UK61 1670 aaKnown RBP16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 GIGYF1O75420 1035 aaPredicted RBP16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 CCDC83Q8IWF9 413 aa16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 JAKMIP1Q96N16 626 aaKnown RBP16.34■□□□□ 0.21
HERPUD1-204ENST00000439977 WDR33Q9C0J8 1336 aaKnown RBP16.33■□□□□ 0.21
HERPUD1-204ENST00000439977 ANKARQ7Z5J8 1434 aa16.33■□□□□ 0.2
HERPUD1-204ENST00000439977 FIBPO43427 364 aa16.33■□□□□ 0.2
HERPUD1-204ENST00000439977 GLRX3O76003 335 aaKnown RBP16.33■□□□□ 0.2
HERPUD1-204ENST00000439977 MYL6BP14649 208 aa16.33■□□□□ 0.2
HERPUD1-204ENST00000439977 TCEANC2Q96MN5 208 aa16.33■□□□□ 0.2
HERPUD1-204ENST00000439977 SYT1P21579 422 aa16.32■□□□□ 0.2
HERPUD1-204ENST00000439977 ZC3H6P61129 1189 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms