RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FCHSD2O94868 740 aa16.25■□□□□ 0.19
PTPRF-208ENST00000437607 LGR6Q9HBX8 967 aa16.25■□□□□ 0.19
PTPRF-208ENST00000437607 AKAP4Q5JQC9 854 aa16.24■□□□□ 0.19
PTPRF-208ENST00000437607 IFFO2Q5TF58 517 aa16.24■□□□□ 0.19
PTPRF-208ENST00000437607 DNAJC10Q8IXB1 793 aa16.24■□□□□ 0.19
PTPRF-208ENST00000437607 CACNA1SQ13698 1873 aa16.23■□□□□ 0.19
PTPRF-208ENST00000437607 CCER2I3L3R5 266 aa16.23■□□□□ 0.19
PTPRF-208ENST00000437607 TM4SF1P30408 202 aa16.23■□□□□ 0.19
PTPRF-208ENST00000437607 SLC52A2Q9HAB3 445 aa16.23■□□□□ 0.19
PTPRF-208ENST00000437607 DICER1Q9UPY3 1922 aaKnown RBP16.23■□□□□ 0.19
PTPRF-208ENST00000437607 TIAM2Q8IVF5 1701 aa16.22■□□□□ 0.19
PTPRF-208ENST00000437607 POLRMTO00411 1230 aaKnown RBP16.22■□□□□ 0.19
PTPRF-208ENST00000437607 NMRK2Q9NPI5 230 aa16.22■□□□□ 0.19
PTPRF-208ENST00000437607 PCNTO95613 3336 aa16.22■□□□□ 0.19
PTPRF-208ENST00000437607 SOS1Q07889 1333 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-208ENST00000437607 RNMTO43148 476 aaKnown RBP16.21■□□□□ 0.19
PTPRF-208ENST00000437607 HMOX1P09601 288 aa16.21■□□□□ 0.19
PTPRF-208ENST00000437607 CHRNA5P30532 468 aa16.21■□□□□ 0.19
PTPRF-208ENST00000437607 SLC39A6Q13433 755 aa16.21■□□□□ 0.19
PTPRF-208ENST00000437607 PIM2Q9P1W9 311 aa16.21■□□□□ 0.19
PTPRF-208ENST00000437607 SCN7AQ01118 1682 aa16.21■□□□□ 0.18
PTPRF-208ENST00000437607 COL11A2P13942 1736 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-208ENST00000437607 TOMM70O94826 608 aa16.2■□□□□ 0.18
PTPRF-208ENST00000437607 CYP19A1P11511 503 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-208ENST00000437607 C9orf131Q5VYM1 1079 aa16.2■□□□□ 0.18
PTPRF-208ENST00000437607 USPL1Q5W0Q7 1092 aa16.2■□□□□ 0.18
PTPRF-208ENST00000437607 COL3A1P02461 1466 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-208ENST00000437607 MTHFSDQ2M296 383 aaKnown RBP16.19■□□□□ 0.18
PTPRF-208ENST00000437607 FER1L6Q2WGJ9 1857 aa16.18■□□□□ 0.18
PTPRF-208ENST00000437607 COL15A1P39059 1388 aa16.18■□□□□ 0.18
PTPRF-208ENST00000437607 DALRD3Q5D0E6 543 aaKnown RBP16.18■□□□□ 0.18
PTPRF-208ENST00000437607 BCL2L12Q9HB09 334 aa16.18■□□□□ 0.18
PTPRF-208ENST00000437607 MRS2Q9HD23 443 aa16.18■□□□□ 0.18
PTPRF-208ENST00000437607 ZBTB1Q9Y2K1 713 aa16.18■□□□□ 0.18
PTPRF-208ENST00000437607 BCORQ6W2J9 1755 aa16.18■□□□□ 0.18
PTPRF-208ENST00000437607 ZPR1O75312 459 aa16.17■□□□□ 0.18
PTPRF-208ENST00000437607 PPP2R1AP30153 589 aa16.17■□□□□ 0.18
PTPRF-208ENST00000437607 DNAJC5GQ8N7S2 189 aa16.17■□□□□ 0.18
PTPRF-208ENST00000437607 NARFQ9UHQ1 456 aa16.17■□□□□ 0.18
PTPRF-208ENST00000437607 ARFGEF2Q9Y6D5 1785 aa16.16■□□□□ 0.18
PTPRF-208ENST00000437607 APLP1P51693 650 aa16.16■□□□□ 0.18
PTPRF-208ENST00000437607 NFIXQ14938 502 aa16.16■□□□□ 0.18
PTPRF-208ENST00000437607 DIAPH1O60610 1272 aaKnown RBP16.15■□□□□ 0.18
PTPRF-208ENST00000437607 CARMIL3Q8ND23 1372 aa16.14■□□□□ 0.17
PTPRF-208ENST00000437607 VSIG10Q8N0Z9 540 aa16.14■□□□□ 0.17
PTPRF-208ENST00000437607 RBM46Q8TBY0 533 aaKnown RBP16.14■□□□□ 0.17
PTPRF-208ENST00000437607 RNF181Q9P0P0 153 aa16.14■□□□□ 0.17
PTPRF-208ENST00000437607 PRELPP51888 382 aa16.13■□□□□ 0.17
PTPRF-208ENST00000437607 RASSF7Q02833 373 aa16.13■□□□□ 0.17
PTPRF-208ENST00000437607 CFAP53Q96M91 514 aa16.13■□□□□ 0.17
PTPRF-208ENST00000437607 SLX4Q8IY92 1834 aa16.12■□□□□ 0.17
PTPRF-208ENST00000437607 SERPINB2P05120 415 aa16.11■□□□□ 0.17
PTPRF-208ENST00000437607 CANXP27824 592 aaKnown RBP16.11■□□□□ 0.17
PTPRF-208ENST00000437607 EIF5P55010 431 aaKnown RBP16.11■□□□□ 0.17
PTPRF-208ENST00000437607 HTRA3P83110 453 aa16.11■□□□□ 0.17
PTPRF-208ENST00000437607 IL17REQ8NFR9 667 aa16.11■□□□□ 0.17
PTPRF-208ENST00000437607 RRAGCQ9HB90 399 aa16.11■□□□□ 0.17
PTPRF-208ENST00000437607 DLG5Q8TDM6 1919 aa16.11■□□□□ 0.17
PTPRF-208ENST00000437607 KDM2BQ8NHM5 1336 aa16.1■□□□□ 0.17
PTPRF-208ENST00000437607 ZNF496Q96IT1 587 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-208ENST00000437607 HEG1Q9ULI3 1381 aa16.09■□□□□ 0.17
PTPRF-208ENST00000437607 FSTL1Q12841 308 aa16.08■□□□□ 0.16
PTPRF-208ENST00000437607 CCDC184Q52MB2 194 aa16.08■□□□□ 0.16
PTPRF-208ENST00000437607 C2CD5Q86YS7 1000 aa16.08■□□□□ 0.16
PTPRF-208ENST00000437607 C16orf71Q8IYS4 520 aaPredicted RBP16.08■□□□□ 0.16
PTPRF-208ENST00000437607 TBC1D9BQ66K14 1250 aa16.07■□□□□ 0.16
PTPRF-208ENST00000437607 ZNF790Q6PG37 636 aa16.07■□□□□ 0.16
PTPRF-208ENST00000437607 ZC3H4Q9UPT8 1303 aaKnown RBP16.07■□□□□ 0.16
PTPRF-208ENST00000437607 CEMIPQ8WUJ3 1361 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 GNAT3A8MTJ3 354 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 NFKBIEO00221 500 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 U2SURPO15042 1029 aaKnown RBP16.06■□□□□ 0.16
PTPRF-208ENST00000437607 STARD3NLO95772 234 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 WDR43Q15061 677 aaKnown RBP eCLIP16.06■□□□□ 0.164e-6■□□□□ 8.9
PTPRF-208ENST00000437607 BICDL1Q6ZP65 573 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 TTC5Q8N0Z6 440 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 TTLL6Q8N841 843 aa16.06■□□□□ 0.16
PTPRF-208ENST00000437607 LMNB1P20700 586 aa16.05■□□□□ 0.16
PTPRF-208ENST00000437607 TEFQ10587 303 aa16.05■□□□□ 0.16
PTPRF-208ENST00000437607 GAS2L2Q8NHY3 880 aa16.05■□□□□ 0.16
PTPRF-208ENST00000437607 A0A087WZG4 1122 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 GLTPD2A6NH11 291 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 H0YIN7 160 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 KCNQ3O43525 872 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 PRR5LQ6MZQ0 368 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 FAM9BQ8IZU0 186 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 CCDC24Q8N4L8 307 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 KLRG1Q96E93 195 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 PHACTR3Q96KR7 559 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 TBC1D2BQ9UPU7 963 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 LAMB4A4D0S4 1761 aa16.04■□□□□ 0.16
PTPRF-208ENST00000437607 NUP98P52948 1817 aa16.03■□□□□ 0.16
PTPRF-208ENST00000437607 A1BGP04217 495 aa16.03■□□□□ 0.16
PTPRF-208ENST00000437607 IL6STP40189 918 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-208ENST00000437607 JMYQ8N9B5 988 aa16.03■□□□□ 0.16
PTPRF-208ENST00000437607 POTECB2RU33 542 aa16.02■□□□□ 0.16
PTPRF-208ENST00000437607 CAMTA2O94983 1202 aa16.02■□□□□ 0.16
PTPRF-208ENST00000437607 TEX13AQ9BXU3 409 aaPredicted RBP16.02■□□□□ 0.16
PTPRF-208ENST00000437607 RSPH6AQ9H0K4 717 aa16.02■□□□□ 0.16
PTPRF-208ENST00000437607 NUDCQ9Y266 331 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms