RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 TSG101Q99816 390 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 MPNDQ8N594 471 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 TMEM57Q8N5G2 664 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 MX1P20591 662 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 TMPOP42166 694 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 THUMPD2Q9BTF0 503 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 KLHL10Q6JEL2 608 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 SYCP2Q9BX26 1530 aa14.04□□□□□ -0.16
CCDC88A-207ENST00000436346 RAB11FIP3O75154 756 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 TMEM266Q2M3C6 531 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 GOLGA6L7A0A1B0GV03 622 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 LIG1P18858 919 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 CCDC112Q8NEF3 446 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 NUP62CLQ9H1M0 184 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 HSP90AB3PQ58FF7 597 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 GOLGA8BA8MQT2 603 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 PPP6R1Q9UPN7 881 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 TAF3Q5VWG9 929 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 CATIPQ7Z7H3 387 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 CTCFLQ8NI51 663 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 CCDC196A0A1B0GTZ2 297 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 C6orf229H3BNL8 230 aa14.03□□□□□ -0.16
CCDC88A-207ENST00000436346 KIF1BPQ96EK5 621 aa14.02□□□□□ -0.16
CCDC88A-207ENST00000436346 A0A087WZG4 1122 aa14.02□□□□□ -0.16
CCDC88A-207ENST00000436346 ANKRD18BA2A2Z9 1011 aa14.02□□□□□ -0.16
CCDC88A-207ENST00000436346 TAF7Q15545 349 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-207ENST00000436346 VPS36Q86VN1 386 aa14.02□□□□□ -0.16
CCDC88A-207ENST00000436346 TAF4BQ92750 862 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 KDM5BQ9UGL1 1544 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 DHX37Q8IY37 1157 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 ZSCAN31Q96LW9 406 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 BOLA2Q9H3K6 86 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 MACROD2A1Z1Q3 448 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 RAB34Q9BZG1 259 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 ERLIN1O75477 346 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 MTERF4Q7Z6M4 381 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 MSH6P52701 1360 aa14.02□□□□□ -0.17
CCDC88A-207ENST00000436346 SAMM50Q9Y512 469 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 CFAP100Q494V2 611 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 SMARCA5O60264 1052 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 GPTP24298 496 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 IQCA1Q86XH1 822 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 GRM1Q13255 1194 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 ZNF444Q8N0Y2 327 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 ARHGAP29Q52LW3 1261 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 RFC4P35249 363 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 PRPF40BQ6NWY9 871 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 MYO1BO43795 1136 aa14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 PHAXQ9H814 394 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-207ENST00000436346 SPA17Q15506 151 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 SMTNL1A8MU46 457 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 FOXO3O43524 673 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 NBPF6Q5VWK0 638 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 NBPF5PQ86XG9 351 aaPredicted RBP14□□□□□ -0.17
CCDC88A-207ENST00000436346 NBPF4Q96M43 638 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 EIF3JO75822 258 aaKnown RBP14□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC82Q8N4S0 544 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 CTNNBL1Q8WYA6 563 aaPredicted RBP14□□□□□ -0.17
CCDC88A-207ENST00000436346 MPHOSPH6Q99547 160 aaKnown RBP14□□□□□ -0.17
CCDC88A-207ENST00000436346 CETN2P41208 172 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 ZNF622Q969S3 477 aaKnown RBP eCLIP14□□□□□ -0.178e-7■■□□□ 13.1
CCDC88A-207ENST00000436346 SSRP1Q08945 709 aaKnown RBP14□□□□□ -0.17
CCDC88A-207ENST00000436346 FKBP15Q5T1M5 1219 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC91Q7Z6B0 441 aa14□□□□□ -0.17
CCDC88A-207ENST00000436346 HMGN5P82970 282 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 MAP3K11Q16584 847 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC148Q8NFR7 591 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 C8orf76Q96K31 380 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 DUOX2Q9NRD8 1548 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC144CPQ8IYA2 1237 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 GOPCQ9HD26 462 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 TRMT1LQ7Z2T5 733 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 TEX14Q8IWB6 1497 aa13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 FGFR1OPO95684 399 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-207ENST00000436346 DDX46Q7L014 1031 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 PSMD1Q99460 953 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 GLRX3O76003 335 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 NOS1P29475 1434 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 FERMT2Q96AC1 680 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC194A0A1B0GVG4 234 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 KIF5BP33176 963 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 MAP3K2Q9Y2U5 619 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 TTC21BQ7Z4L5 1316 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 RNF41Q9H4P4 317 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 HLA-DOAP06340 250 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 CDC5LQ99459 802 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 NUP88Q99567 741 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 SYCE3A1L190 88 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 EXOC5O00471 708 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC178Q5BJE1 867 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 CACNA2D4Q7Z3S7 1137 aa13.98□□□□□ -0.17
CCDC88A-207ENST00000436346 MYO9BQ13459 2157 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 CWC25Q9NXE8 425 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 PDE4BQ07343 736 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 NME9Q86XW9 330 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 CHD1O14646 1710 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 BAG3O95817 575 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 TTF1Q15361 905 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 PLEKHH1Q9ULM0 1364 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms