RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 RBM27Q9P2N5 1060 aaKnown RBP14.37□□□□□ -0.11
CD44-209ENST00000433892 POLA2Q14181 598 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 RHPN1Q8TCX5 695 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 SETD1BQ9UPS6 1966 aaKnown RBP14.36□□□□□ -0.11
CD44-209ENST00000433892 FER1L4A9Z1Z3 1794 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 RAB11FIP3O75154 756 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 PLEKHG5O94827 1062 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 CUL4AQ13619 759 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 AOX1Q06278 1338 aa14.36□□□□□ -0.11
CD44-209ENST00000433892 CCDC173Q0VFZ6 552 aa14.35□□□□□ -0.11
CD44-209ENST00000433892 DNAAF4Q8WXU2 420 aa14.35□□□□□ -0.11
CD44-209ENST00000433892 ANP32BQ92688 251 aaKnown RBP14.35□□□□□ -0.11
CD44-209ENST00000433892 LRRC59Q96AG4 307 aaKnown RBP14.35□□□□□ -0.11
CD44-209ENST00000433892 PSME1Q06323 249 aa14.35□□□□□ -0.11
CD44-209ENST00000433892 BEND3Q5T5X7 828 aa14.35□□□□□ -0.11
CD44-209ENST00000433892 MPRIPQ6WCQ1 1025 aa14.35□□□□□ -0.11
CD44-209ENST00000433892 PI4K2BQ8TCG2 481 aa14.35□□□□□ -0.11
CD44-209ENST00000433892 NAP1L5Q96NT1 182 aaPredicted RBP14.35□□□□□ -0.11
CD44-209ENST00000433892 LTN1O94822 1766 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 N4BP2Q86UW6 1770 aaPredicted RBP14.34□□□□□ -0.11
CD44-209ENST00000433892 TEFQ10587 303 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 ESCO1Q5FWF5 840 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 PPP1R9BQ96SB3 815 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 NSFL1CQ9UNZ2 370 aaKnown RBP14.34□□□□□ -0.11
CD44-209ENST00000433892 USP54Q70EL1 1684 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 BTBD11A6QL63 1104 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 BRD1O95696 1058 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 PRIM1P49642 420 aaKnown RBP14.34□□□□□ -0.11
CD44-209ENST00000433892 ZNF530Q6P9A1 599 aaPredicted RBP14.34□□□□□ -0.11
CD44-209ENST00000433892 KIF1BPQ96EK5 621 aa14.34□□□□□ -0.11
CD44-209ENST00000433892 INTS4Q96HW7 963 aaKnown RBP14.33□□□□□ -0.12
CD44-209ENST00000433892 RBSNQ9H1K0 784 aa14.33□□□□□ -0.12
CD44-209ENST00000433892 HOXB7P09629 217 aa14.32□□□□□ -0.12
CD44-209ENST00000433892 HSPA4P34932 840 aa14.32□□□□□ -0.12
CD44-209ENST00000433892 TMEM63CQ9P1W3 806 aa14.32□□□□□ -0.12
CD44-209ENST00000433892 NFAT5O94916 1531 aa14.32□□□□□ -0.12
CD44-209ENST00000433892 FOXD4L6Q3SYB3 417 aaPredicted RBP14.32□□□□□ -0.12
CD44-209ENST00000433892 FOXD4L3Q6VB84 417 aaPredicted RBP14.32□□□□□ -0.12
CD44-209ENST00000433892 IL17RAQ96F46 866 aa14.32□□□□□ -0.12
CD44-209ENST00000433892 AKAP4Q5JQC9 854 aa14.31□□□□□ -0.12
CD44-209ENST00000433892 SGSM2O43147 1006 aa14.31□□□□□ -0.12
CD44-209ENST00000433892 KCNH5Q8NCM2 988 aa14.31□□□□□ -0.12
CD44-209ENST00000433892 ADCY9O60503 1353 aa14.31□□□□□ -0.12
CD44-209ENST00000433892 MED1Q15648 1581 aaPredicted RBP14.3□□□□□ -0.12
CD44-209ENST00000433892 SYCE3A1L190 88 aa14.3□□□□□ -0.12
CD44-209ENST00000433892 XPCQ01831 940 aaPredicted RBP14.3□□□□□ -0.12
CD44-209ENST00000433892 OS9Q13438 667 aaPredicted RBP14.3□□□□□ -0.12
CD44-209ENST00000433892 PLEKHO1Q53GL0 409 aaPredicted RBP14.3□□□□□ -0.12
CD44-209ENST00000433892 CWC27Q6UX04 472 aaKnown RBP14.3□□□□□ -0.12
CD44-209ENST00000433892 CNTROBQ8N137 903 aa14.3□□□□□ -0.12
CD44-209ENST00000433892 CHMP4AQ9BY43 222 aa14.3□□□□□ -0.12
CD44-209ENST00000433892 RAD50Q92878 1312 aa14.3□□□□□ -0.12
CD44-209ENST00000433892 EPB41L2O43491 1005 aaKnown RBP14.29□□□□□ -0.12
CD44-209ENST00000433892 PROSER3Q2NL68 480 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 DBF4Q9UBU7 674 aaPredicted RBP14.29□□□□□ -0.12
CD44-209ENST00000433892 SPG7Q9UQ90 795 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 SNX14Q9Y5W7 946 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 RGPD2P0DJD1 1756 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 HSP90AB4PQ58FF6 505 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 LRSAM1Q6UWE0 723 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 ANKLE2Q86XL3 938 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 LSG1Q9H089 658 aaKnown RBP14.29□□□□□ -0.12
CD44-209ENST00000433892 MAP3K2Q9Y2U5 619 aa14.29□□□□□ -0.12
CD44-209ENST00000433892 PRAMEF22A3QJZ6 481 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 RNMTO43148 476 aaKnown RBP14.28□□□□□ -0.12
CD44-209ENST00000433892 MBD3O95983 291 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 C1orf141Q5JVX7 400 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 LMOD2Q6P5Q4 547 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 RASEFQ8IZ41 740 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 LARP6Q9BRS8 491 aaKnown RBP14.28□□□□□ -0.12
CD44-209ENST00000433892 GDPD2Q9HCC8 539 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 C9orf78Q9NZ63 289 aaPredicted RBP14.28□□□□□ -0.12
CD44-209ENST00000433892 KDM3BQ7LBC6 1761 aa14.28□□□□□ -0.12
CD44-209ENST00000433892 GCP02774 474 aa14.27□□□□□ -0.12
CD44-209ENST00000433892 GIGYF1O75420 1035 aaPredicted RBP14.27□□□□□ -0.13
CD44-209ENST00000433892 CWF19L2Q2TBE0 894 aaKnown RBP14.27□□□□□ -0.13
CD44-209ENST00000433892 AMOTQ4VCS5 1084 aa14.27□□□□□ -0.13
CD44-209ENST00000433892 KIAA1211Q6ZU35 1233 aa14.27□□□□□ -0.13
CD44-209ENST00000433892 ZSCAN30Q86W11 494 aa14.27□□□□□ -0.13
CD44-209ENST00000433892 PA2G4Q9UQ80 394 aaKnown RBP14.27□□□□□ -0.13
CD44-209ENST00000433892 PXDNQ92626 1479 aa14.27□□□□□ -0.13
CD44-209ENST00000433892 GLRX3O76003 335 aaKnown RBP14.26□□□□□ -0.13
CD44-209ENST00000433892 CLASRPQ8N2M8 674 aaKnown RBP14.26□□□□□ -0.13
CD44-209ENST00000433892 ORAI2Q96SN7 254 aa14.26□□□□□ -0.13
CD44-209ENST00000433892 AK2P54819 239 aa14.26□□□□□ -0.13
CD44-209ENST00000433892 MTX1Q13505 466 aa14.26□□□□□ -0.13
CD44-209ENST00000433892 CHD2O14647 1828 aaKnown RBP14.26□□□□□ -0.13
CD44-209ENST00000433892 TTC41PQ6P2S7 1318 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 WDR33Q9C0J8 1336 aaKnown RBP14.25□□□□□ -0.13
CD44-209ENST00000433892 USP42Q9H9J4 1324 aaKnown RBP14.25□□□□□ -0.13
CD44-209ENST00000433892 GADD45BO75293 160 aaPredicted RBP14.25□□□□□ -0.13
CD44-209ENST00000433892 CPA1P15085 419 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 KSR2Q6VAB6 950 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 ARHGEF25Q86VW2 580 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 ANKRD24Q8TF21 1146 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 TTC14Q96N46 770 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 DIAPH3Q9NSV4 1193 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 RUFY3Q7L099 469 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 RNF214Q8ND24 703 aa14.25□□□□□ -0.13
CD44-209ENST00000433892 LMO7Q8WWI1 1683 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms