RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ERFEQ4G0M1 354 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 DMRTA1Q5VZB9 504 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 POTEEQ6S8J3 1075 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 SH3RF1Q7Z6J0 888 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 CRELD1Q96HD1 420 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 CITED4Q96RK1 184 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.07□□□□□ -1.281e-7■□□□□ 9.6
VPS13A-207ENST00000419472 AXIN2Q9Y2T1 843 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 PDS5BQ9NTI5 1447 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 C4orf48Q5BLP8 95 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 PSMD1Q99460 953 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 UNC93B1Q9H1C4 597 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 LRFN2Q9ULH4 789 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 NOP58Q9Y2X3 529 aaKnown RBP7.07□□□□□ -1.28
VPS13A-207ENST00000419472 THOC2Q8NI27 1593 aaKnown RBP7.06□□□□□ -1.28
VPS13A-207ENST00000419472 M0R2N6 131 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 MAP4K4O95819 1239 aaPredicted RBP7.06□□□□□ -1.28
VPS13A-207ENST00000419472 ANAPC15P60006 121 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 FAM160A2Q8N612 972 aaPredicted RBP7.06□□□□□ -1.28
VPS13A-207ENST00000419472 SALL2Q9Y467 1007 aaPredicted RBP7.06□□□□□ -1.28
VPS13A-207ENST00000419472 ATAD2Q6PL18 1390 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 ORC1Q13415 861 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 FILIP1Q7Z7B0 1213 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 ZNF654Q8IZM8 581 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 ALKBH8Q96BT7 664 aaKnown RBP7.06□□□□□ -1.28
VPS13A-207ENST00000419472 ZFRQ96KR1 1074 aaKnown RBP7.06□□□□□ -1.28
VPS13A-207ENST00000419472 IFT57Q9NWB7 429 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 COL4A3BPQ9Y5P4 624 aa7.06□□□□□ -1.28
VPS13A-207ENST00000419472 NBPF20Q3BBV1 942 aa7.05□□□□□ -1.28
VPS13A-207ENST00000419472 STIM2Q9P246 746 aa7.05□□□□□ -1.28
VPS13A-207ENST00000419472 POLIQ9UNA4 740 aa7.05□□□□□ -1.28
VPS13A-207ENST00000419472 PEX14O75381 377 aa7.05□□□□□ -1.28
VPS13A-207ENST00000419472 DXOO77932 396 aaKnown RBP7.05□□□□□ -1.28
VPS13A-207ENST00000419472 ATF4P18848 351 aaPredicted RBP7.05□□□□□ -1.28
VPS13A-207ENST00000419472 CC2D2BQ6DHV5 1058 aa7.05□□□□□ -1.28
VPS13A-207ENST00000419472 RPUSD2Q8IZ73 545 aaKnown RBP7.05□□□□□ -1.28
VPS13A-207ENST00000419472 KIF21AQ7Z4S6 1674 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 K7ELQ4 463 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-207ENST00000419472 ZBTB24O43167 697 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-207ENST00000419472 HSD3B2P26439 372 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 MEI1Q5TIA1 1274 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 FOXJ1Q92949 421 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 KCNH8Q96L42 1107 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 METTL14Q9HCE5 456 aaKnown RBP7.04□□□□□ -1.28
VPS13A-207ENST00000419472 GGT7Q9UJ14 662 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 POTEIP0CG38 1075 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 IBSPP21815 317 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-207ENST00000419472 APLP1P51693 650 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 RNF20Q5VTR2 975 aa7.04□□□□□ -1.28
VPS13A-207ENST00000419472 SCNN1DP51172 638 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 PCDH12Q9NPG4 1184 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 SERTAD1Q9UHV2 236 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 AK5Q9Y6K8 562 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 TPD52L2O43399 206 aaKnown RBP7.03□□□□□ -1.28
VPS13A-207ENST00000419472 CFTRP13569 1480 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 NESP48681 1621 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 EPHA4P54764 986 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 FGD1P98174 961 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 PAK2Q13177 524 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 ALG1LQ6GMV1 187 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 QTRT2Q9H974 415 aaKnown RBP7.03□□□□□ -1.28
VPS13A-207ENST00000419472 NEUROD4Q9HD90 331 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 G3BP2Q9UN86 482 aaKnown RBP7.03□□□□□ -1.28
VPS13A-207ENST00000419472 PLEKHD1A6NEE1 506 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 AGERQ15109 404 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 LINC01559Q495D7 138 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 PI16Q6UXB8 463 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 STAG1Q8WVM7 1258 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 PRDM16Q9HAZ2 1276 aa7.03□□□□□ -1.28
VPS13A-207ENST00000419472 OPLAHO14841 1288 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 GJA8P48165 433 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 DNM1Q05193 864 aaKnown RBP7.02□□□□□ -1.29
VPS13A-207ENST00000419472 HS2ST1Q7LGA3 356 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 CCDC24Q8N4L8 307 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 CHPF2Q9P2E5 772 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 POTEJP0CG39 1038 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 RNF187Q5TA31 235 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-207ENST00000419472 SLC10A4Q96EP9 437 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 KANSL2Q9H9L4 492 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 COPRSQ9NQ92 184 aa7.02□□□□□ -1.29
VPS13A-207ENST00000419472 V9GY48 417 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-207ENST00000419472 A6NHS1 94 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 EXOC8Q8IYI6 725 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 GJD3Q8N144 294 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 MRFAP1L1Q96HT8 127 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 GABBR1Q9UBS5 961 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 WDR62O43379 1518 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 XRCC5P13010 732 aaKnown RBP7.01□□□□□ -1.29
VPS13A-207ENST00000419472 SERINC3Q13530 473 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 SOGA3Q5TF21 947 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 RNPC3Q96LT9 517 aaKnown RBP7.01□□□□□ -1.29
VPS13A-207ENST00000419472 VPS9D1Q9Y2B5 631 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 MRC2Q9UBG0 1479 aa7.01□□□□□ -1.29
VPS13A-207ENST00000419472 PPP1R12BO60237 982 aaPredicted RBP7□□□□□ -1.29
VPS13A-207ENST00000419472 MMP16P51512 607 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 ALKBH2Q6NS38 261 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 VPS37DQ86XT2 251 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 BAP1Q92560 729 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 ZNF408Q9H9D4 720 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 FAN1Q9Y2M0 1017 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms