RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 SEPT3Q9UH03 358 aa7.24□□□□□ -1.25
BRCA1-204ENST00000412061 CHMP3Q9Y3E7 222 aa7.24□□□□□ -1.25
BRCA1-204ENST00000412061 HRH3Q9Y5N1 445 aa7.24□□□□□ -1.25
BRCA1-204ENST00000412061 E9PSI1 815 aa7.23□□□□□ -1.25
BRCA1-204ENST00000412061 CENPCQ03188 943 aa7.23□□□□□ -1.25
BRCA1-204ENST00000412061 TBCELQ5QJ74 424 aa7.23□□□□□ -1.25
BRCA1-204ENST00000412061 MEIOBQ8N635 442 aa7.23□□□□□ -1.25
BRCA1-204ENST00000412061 H3BRB1 525 aa7.22□□□□□ -1.25
BRCA1-204ENST00000412061 ICMTO60725 284 aa7.22□□□□□ -1.25
BRCA1-204ENST00000412061 SNRPBP14678 240 aaKnown RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 ZNF211Q13398 564 aaPredicted RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 CAPN12Q6ZSI9 719 aa7.22□□□□□ -1.25
BRCA1-204ENST00000412061 GLYCTKQ8IVS8 523 aa7.22□□□□□ -1.25
BRCA1-204ENST00000412061 HPS1Q92902 700 aa7.22□□□□□ -1.25
BRCA1-204ENST00000412061 FHDC1Q9C0D6 1143 aaPredicted RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 TUT1Q9H6E5 874 aaKnown RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 ZNF395Q9H8N7 513 aaPredicted RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 BIN2Q9UBW5 565 aaPredicted RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 IQSEC3Q9UPP2 1182 aaPredicted RBP7.22□□□□□ -1.25
BRCA1-204ENST00000412061 WIPF1O43516 503 aa7.21□□□□□ -1.26
BRCA1-204ENST00000412061 GTF2E1P29083 439 aaPredicted RBP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 FKBP4Q02790 459 aaKnown RBP eCLIP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 SF3B2Q13435 895 aaKnown RBP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 NAA30Q147X3 362 aaPredicted RBP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 TSEN34Q9BSV6 310 aaKnown RBP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 C2orf49Q9BVC5 232 aaPredicted RBP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 ATP13A2Q9NQ11 1180 aa7.21□□□□□ -1.26
BRCA1-204ENST00000412061 DNMT3AQ9Y6K1 912 aaPredicted RBP7.21□□□□□ -1.26
BRCA1-204ENST00000412061 HELQQ8TDG4 1101 aa7.2□□□□□ -1.26
BRCA1-204ENST00000412061 ZSCAN10Q96SZ4 725 aaPredicted RBP7.2□□□□□ -1.26
BRCA1-204ENST00000412061 ANO2Q9NQ90 1003 aa7.2□□□□□ -1.26
BRCA1-204ENST00000412061 USP3Q9Y6I4 520 aa7.2□□□□□ -1.26
BRCA1-204ENST00000412061 SERTM1A2A2V5 107 aa7.19□□□□□ -1.26
BRCA1-204ENST00000412061 CAPN5O15484 640 aaPredicted RBP7.19□□□□□ -1.26
BRCA1-204ENST00000412061 UPP2O95045 317 aa7.19□□□□□ -1.26
BRCA1-204ENST00000412061 GPC1P35052 558 aa7.19□□□□□ -1.26
BRCA1-204ENST00000412061 TEAD4Q15561 434 aa7.19□□□□□ -1.26
BRCA1-204ENST00000412061 TMEM214Q6NUQ4 689 aaKnown RBP7.19□□□□□ -1.26
BRCA1-204ENST00000412061 C16orf46Q6P387 395 aa7.19□□□□□ -1.26
BRCA1-204ENST00000412061 PPARGC1BQ86YN6 1023 aaKnown RBP7.19□□□□□ -1.26
BRCA1-204ENST00000412061 CABP1Q9NZU7 370 aa7.19□□□□□ -1.26
BRCA1-204ENST00000412061 POTEAQ6S8J7 498 aa7.18□□□□□ -1.26
BRCA1-204ENST00000412061 LINC00528Q8N1L1 170 aa7.18□□□□□ -1.26
BRCA1-204ENST00000412061 RHBDD1Q8TEB9 315 aa7.18□□□□□ -1.26
BRCA1-204ENST00000412061 NIFKQ9BYG3 293 aaKnown RBP7.18□□□□□ -1.26
BRCA1-204ENST00000412061 STK17AQ9UEE5 414 aa7.18□□□□□ -1.26
BRCA1-204ENST00000412061 ZNF232Q9UNY5 417 aa7.18□□□□□ -1.26
BRCA1-204ENST00000412061 EML1O00423 815 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 SPINT1O43278 529 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 NOS2P35228 1153 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 RNF144AP50876 292 aaPredicted RBP7.17□□□□□ -1.26
BRCA1-204ENST00000412061 HIRAP54198 1017 aaPredicted RBP7.17□□□□□ -1.26
BRCA1-204ENST00000412061 MARSP56192 900 aaKnown RBP7.17□□□□□ -1.26
BRCA1-204ENST00000412061 MTMR3Q13615 1198 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 GNASQ5JWF2 1037 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 SLC27A3Q5K4L6 730 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 GRIP2Q9C0E4 1043 aa7.17□□□□□ -1.26
BRCA1-204ENST00000412061 TERTO14746 1132 aaKnown RBP7.16□□□□□ -1.26
BRCA1-204ENST00000412061 FAM13AO94988 1023 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 ERCC3P19447 782 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 ZNF295-AS1Q8N0V1 137 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 ZDHHC1Q8WTX9 485 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 L3MBTL2Q969R5 705 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 MYO19Q96H55 970 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 TRIM47Q96LD4 638 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 INSM2Q96T92 566 aaPredicted RBP7.16□□□□□ -1.26
BRCA1-204ENST00000412061 SAP130Q9H0E3 1048 aa7.16□□□□□ -1.26
BRCA1-204ENST00000412061 POLMQ9NP87 494 aaPredicted RBP7.16□□□□□ -1.26
BRCA1-204ENST00000412061 NPR3P17342 541 aa7.15□□□□□ -1.26
BRCA1-204ENST00000412061 COX20Q5RI15 118 aa7.15□□□□□ -1.26
BRCA1-204ENST00000412061 NGLY1Q96IV0 654 aa7.15□□□□□ -1.26
BRCA1-204ENST00000412061 QTRT2Q9H974 415 aaKnown RBP7.15□□□□□ -1.26
BRCA1-204ENST00000412061 BMP2P12643 396 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 INSM1Q01101 510 aaPredicted RBP7.14□□□□□ -1.27
BRCA1-204ENST00000412061 ECM1Q16610 540 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 SH3PXD2AQ5TCZ1 1133 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 MRPL14Q6P1L8 145 aaKnown RBP7.14□□□□□ -1.27
BRCA1-204ENST00000412061 ALDH16A1Q8IZ83 802 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 AMOTL2Q9Y2J4 779 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 HCN4Q9Y3Q4 1203 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 PARP3Q9Y6F1 533 aa7.14□□□□□ -1.27
BRCA1-204ENST00000412061 MPSTP25325 297 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 CTSOP43234 321 aaPredicted RBP7.13□□□□□ -1.27
BRCA1-204ENST00000412061 ARHGAP4P98171 946 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 RTN1Q16799 776 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 C6orf118Q5T5N4 469 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 DNAJC14Q6Y2X3 702 aaPredicted RBP7.13□□□□□ -1.27
BRCA1-204ENST00000412061 ABTB2Q8N961 1025 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 PHACTR1Q9C0D0 580 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 STIM2Q9P246 746 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 DCTN4Q9UJW0 460 aa7.13□□□□□ -1.27
BRCA1-204ENST00000412061 SPATA31C2B4DYI2 1134 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 TNFRSF10BO14763 440 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 BRD2P25440 801 aaKnown RBP7.12□□□□□ -1.27
BRCA1-204ENST00000412061 MAPK1P28482 360 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 PLA2G4AP47712 749 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 SCARF1Q14162 830 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 C4orf17Q53FE4 359 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 C1orf53Q5VUE5 145 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 ALKBH2Q6NS38 261 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms