RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 BACH2Q9BYV9 841 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 GZF1Q9H116 711 aaPredicted RBP10.99□□□□□ -0.65
LIG4-202ENST00000405925 GRM8O00222 908 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 RAD21O60216 631 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 TRIM34Q9BYJ4 488 aa10.98□□□□□ -0.65
LIG4-202ENST00000405925 BOLA2Q9H3K6 86 aa10.98□□□□□ -0.65
LIG4-202ENST00000405925 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.98□□□□□ -0.65
LIG4-202ENST00000405925 SPATA31A3Q5VYP0 1347 aa10.98□□□□□ -0.65
LIG4-202ENST00000405925 CPLX1O14810 134 aa10.98□□□□□ -0.65
LIG4-202ENST00000405925 GLRX3O76003 335 aaKnown RBP10.98□□□□□ -0.65
LIG4-202ENST00000405925 LDHAL6AQ6ZMR3 332 aa10.98□□□□□ -0.65
LIG4-202ENST00000405925 ANKRD18BA2A2Z9 1011 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 ALDH1L1O75891 902 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 PHKG2P15735 406 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 PLEKHF1Q96S99 279 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 BABAM1Q9NWV8 329 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 ZC3H13Q5T200 1668 aaKnown RBP10.97□□□□□ -0.65
LIG4-202ENST00000405925 SETBP1Q9Y6X0 1596 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 H3BQV1 296 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 KCNQ3O43525 872 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 NEK4P51957 841 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 IFFO2Q5TF58 517 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 CWC27Q6UX04 472 aaKnown RBP10.97□□□□□ -0.65
LIG4-202ENST00000405925 DZIP3Q86Y13 1208 aaKnown RBP10.97□□□□□ -0.65
LIG4-202ENST00000405925 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIG4-202ENST00000405925 IDH1O75874 414 aaKnown RBP10.97□□□□□ -0.65
LIG4-202ENST00000405925 A1BGP04217 495 aa10.97□□□□□ -0.65
LIG4-202ENST00000405925 AKAP17AQ02040 695 aaKnown RBP10.96□□□□□ -0.65
LIG4-202ENST00000405925 NFXL1Q6ZNB6 911 aa10.96□□□□□ -0.65
LIG4-202ENST00000405925 DNAJC10Q8IXB1 793 aa10.96□□□□□ -0.65
LIG4-202ENST00000405925 ABCF2Q9UG63 623 aa10.96□□□□□ -0.65
LIG4-202ENST00000405925 PTMAP06454 111 aaKnown RBP10.96□□□□□ -0.65
LIG4-202ENST00000405925 LMBR1LQ6UX01 489 aa10.96□□□□□ -0.65
LIG4-202ENST00000405925 TRIM44Q96DX7 344 aaPredicted RBP10.96□□□□□ -0.65
LIG4-202ENST00000405925 IFIT1P09914 478 aaKnown RBP10.96□□□□□ -0.66
LIG4-202ENST00000405925 NBPF5PQ86XG9 351 aaPredicted RBP10.96□□□□□ -0.66
LIG4-202ENST00000405925 ANKRD44Q8N8A2 993 aa10.96□□□□□ -0.66
LIG4-202ENST00000405925 NIP7Q9Y221 180 aaKnown RBP eCLIP10.96□□□□□ -0.66
LIG4-202ENST00000405925 AKAP2Q9Y2D5 859 aa10.96□□□□□ -0.66
LIG4-202ENST00000405925 EIF4A1P60842 406 aaKnown RBP10.95□□□□□ -0.66
LIG4-202ENST00000405925 CHAF1AQ13111 956 aaPredicted RBP10.95□□□□□ -0.66
LIG4-202ENST00000405925 TSHZ3Q63HK5 1081 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 HOXB7P09629 217 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 CARD10Q9BWT7 1032 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 PREX1Q8TCU6 1659 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 WDR17Q8IZU2 1322 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 RTL1A6NKG5 1358 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 TULP4Q9NRJ4 1543 aa10.95□□□□□ -0.66
LIG4-202ENST00000405925 SOS1Q07889 1333 aaPredicted RBP10.95□□□□□ -0.66
LIG4-202ENST00000405925 RIMS1Q86UR5 1692 aaKnown RBP10.95□□□□□ -0.66
LIG4-202ENST00000405925 ERICH2A1L162 156 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 NCBP3Q53F19 620 aaKnown RBP10.94□□□□□ -0.66
LIG4-202ENST00000405925 MCTP1Q6DN14 999 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 LRP2BPQ9P2M1 347 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 PTCH1Q13635 1447 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 CHMP4CQ96CF2 233 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 RTCBQ9Y3I0 505 aaKnown RBP10.94□□□□□ -0.66
LIG4-202ENST00000405925 SPATA31D1Q6ZQQ2 1576 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 VWDEQ8N2E2 1590 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 HDAC1Q13547 482 aaPredicted RBP10.94□□□□□ -0.66
LIG4-202ENST00000405925 RRP12Q5JTH9 1297 aaKnown RBP10.94□□□□□ -0.66
LIG4-202ENST00000405925 RAI14Q9P0K7 980 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 RHPN1Q8TCX5 695 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 RPGRQ92834 1020 aaKnown RBP10.94□□□□□ -0.66
LIG4-202ENST00000405925 SETDB2Q96T68 719 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 ZBTB40Q9NUA8 1239 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 ANKIB1Q9P2G1 1089 aa10.94□□□□□ -0.66
LIG4-202ENST00000405925 SETD1BQ9UPS6 1966 aaKnown RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 DHX16O60231 1041 aaKnown RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 PSMA5P28066 241 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 SF3A1Q15459 793 aaKnown RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 CDC5LQ99459 802 aaKnown RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 AXIN2Q9Y2T1 843 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 USP19O94966 1318 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 QRICH2Q9H0J4 1663 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 CDK12Q9NYV4 1490 aaPredicted RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 KIF24Q5T7B8 1368 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 VPS37CA5D8V6 355 aaPredicted RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 GNPATO15228 680 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 ECHDC1Q9NTX5 307 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 CCNL1Q9UK58 526 aaPredicted RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 PA2G4Q9UQ80 394 aaKnown RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 SMC3Q9UQE7 1217 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 STK11IPQ8N1F8 1099 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 ZNF219Q9P2Y4 722 aaPredicted RBP10.93□□□□□ -0.66
LIG4-202ENST00000405925 MTMR7Q9Y216 660 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 USP16Q9Y5T5 823 aa10.93□□□□□ -0.66
LIG4-202ENST00000405925 ERVV-2B6SEH9 535 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIG4-202ENST00000405925 LAMC1P11047 1609 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 CEP170BQ9Y4F5 1589 aaPredicted RBP10.92□□□□□ -0.66
LIG4-202ENST00000405925 GIGYF1O75420 1035 aaPredicted RBP10.92□□□□□ -0.66
LIG4-202ENST00000405925 FOSBP53539 338 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 ATP8B2P98198 1209 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 SNRKQ9NRH2 765 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 TFCP2L1Q9NZI6 479 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 C1orf167Q5SNV9 1468 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 RICTORQ6R327 1708 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 RABEP1Q15276 862 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 CAVIN4Q5BKX8 364 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms