RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 ANO2Q9NQ90 1003 aa19.33■□□□□ 0.68
CHMP1A-201ENST00000397901 ZNF142P52746 1687 aaPredicted RBP19.32■□□□□ 0.68
CHMP1A-201ENST00000397901 LRRCC1Q9C099 1032 aa19.32■□□□□ 0.68
CHMP1A-201ENST00000397901 PNMA6EA0A0J9YXQ4 647 aa19.32■□□□□ 0.68
CHMP1A-201ENST00000397901 MX1P20591 662 aa19.32■□□□□ 0.68
CHMP1A-201ENST00000397901 FOXD4L6Q3SYB3 417 aaPredicted RBP19.32■□□□□ 0.68
CHMP1A-201ENST00000397901 FOXD4L3Q6VB84 417 aaPredicted RBP19.32■□□□□ 0.68
CHMP1A-201ENST00000397901 RNF214Q8ND24 703 aa19.31■□□□□ 0.68
CHMP1A-201ENST00000397901 CHD2O14647 1828 aaKnown RBP19.31■□□□□ 0.68
CHMP1A-201ENST00000397901 MCCP23508 829 aa19.31■□□□□ 0.68
CHMP1A-201ENST00000397901 DNTTIP2Q5QJE6 756 aaKnown RBP19.31■□□□□ 0.68
CHMP1A-201ENST00000397901 STK31Q9BXU1 1019 aa19.31■□□□□ 0.68
CHMP1A-201ENST00000397901 SALL3Q9BXA9 1300 aa19.3■□□□□ 0.68
CHMP1A-201ENST00000397901 FKBP5Q13451 457 aaPredicted RBP19.3■□□□□ 0.68
CHMP1A-201ENST00000397901 SBNO1A3KN83 1393 aa19.3■□□□□ 0.68
CHMP1A-201ENST00000397901 BRD1O95696 1058 aa19.3■□□□□ 0.68
CHMP1A-201ENST00000397901 NAP1L2Q9ULW6 460 aaPredicted RBP19.3■□□□□ 0.68
CHMP1A-201ENST00000397901 MARF1Q9Y4F3 1742 aaKnown RBP19.3■□□□□ 0.68
CHMP1A-201ENST00000397901 ARHGEF10O15013 1369 aa19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 CHMLP26374 656 aa19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 UPF3BQ9BZI7 483 aaKnown RBP19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 FLT4P35916 1363 aa19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 USP54Q70EL1 1684 aa19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 PTMAP06454 111 aaKnown RBP19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 BCL11BQ9C0K0 894 aaPredicted RBP19.29■□□□□ 0.68
CHMP1A-201ENST00000397901 MCM2P49736 904 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 FLIIQ13045 1269 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 ATP2B3Q16720 1220 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 UNC5CLQ8IV45 518 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 ADAMTSL3P82987 1691 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 MBD3O95983 291 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 TMEM51Q9NW97 253 aa19.28■□□□□ 0.68
CHMP1A-201ENST00000397901 CUL4AQ13619 759 aa19.27■□□□□ 0.68
CHMP1A-201ENST00000397901 ANKLE2Q86XL3 938 aa19.27■□□□□ 0.67
CHMP1A-201ENST00000397901 GDPD2Q9HCC8 539 aa19.27■□□□□ 0.67
CHMP1A-201ENST00000397901 LRRFIP2Q9Y608 721 aaKnown RBP19.27■□□□□ 0.67
CHMP1A-201ENST00000397901 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.27■□□□□ 0.675e-7■■□□□ 12.9
CHMP1A-201ENST00000397901 GNAI3P08754 354 aa19.26■□□□□ 0.67
CHMP1A-201ENST00000397901 ATP8B2P98198 1209 aa19.26■□□□□ 0.67
CHMP1A-201ENST00000397901 KIF3AQ9Y496 699 aa19.26■□□□□ 0.67
CHMP1A-201ENST00000397901 KDRP35968 1356 aa19.26■□□□□ 0.67
CHMP1A-201ENST00000397901 PDIA4P13667 645 aaKnown RBP19.25■□□□□ 0.67
CHMP1A-201ENST00000397901 IL1RAPL2Q9NP60 686 aa19.25■□□□□ 0.67
CHMP1A-201ENST00000397901 IL25Q9H293 177 aa19.25■□□□□ 0.67
CHMP1A-201ENST00000397901 ANAPC15P60006 121 aa19.24■□□□□ 0.67
CHMP1A-201ENST00000397901 PIBF1Q8WXW3 757 aa19.24■□□□□ 0.67
CHMP1A-201ENST00000397901 JARID2Q92833 1246 aaPredicted RBP19.24■□□□□ 0.67
CHMP1A-201ENST00000397901 EYA1Q99502 592 aa19.24■□□□□ 0.67
CHMP1A-201ENST00000397901 IPO4Q8TEX9 1081 aaKnown RBP19.24■□□□□ 0.67
CHMP1A-201ENST00000397901 TSC1Q92574 1164 aa19.24■□□□□ 0.67
CHMP1A-201ENST00000397901 MAP4K4O95819 1239 aaPredicted RBP19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 AMPHP49418 695 aa19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 NLRP6P59044 892 aa19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 CCDC30Q5VVM6 783 aa19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 INTS4Q96HW7 963 aaKnown RBP19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 GADD45BO75293 160 aaPredicted RBP19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 NUTM1Q86Y26 1132 aa19.23■□□□□ 0.67
CHMP1A-201ENST00000397901 IGSF1Q8N6C5 1336 aa19.22■□□□□ 0.67
CHMP1A-201ENST00000397901 SETD1BQ9UPS6 1966 aaKnown RBP19.22■□□□□ 0.67
CHMP1A-201ENST00000397901 TPRNQ4KMQ1 711 aa19.22■□□□□ 0.67
CHMP1A-201ENST00000397901 TSPY26PQ9H489 355 aa19.22■□□□□ 0.67
CHMP1A-201ENST00000397901 PDCL2Q8N4E4 241 aa19.22■□□□□ 0.67
CHMP1A-201ENST00000397901 STAP2Q9UGK3 403 aa19.22■□□□□ 0.67
CHMP1A-201ENST00000397901 TUBGCP6Q96RT7 1819 aa19.21■□□□□ 0.67
CHMP1A-201ENST00000397901 NOLC1Q14978 699 aaKnown RBP eCLIP19.21■□□□□ 0.67
CHMP1A-201ENST00000397901 SRCIN1Q9C0H9 1055 aa19.2■□□□□ 0.66
CHMP1A-201ENST00000397901 UBTFL1P0CB47 393 aaPredicted RBP19.19■□□□□ 0.66
CHMP1A-201ENST00000397901 USP48Q86UV5 1035 aa19.19■□□□□ 0.66
CHMP1A-201ENST00000397901 BCL2L12Q9HB09 334 aa19.19■□□□□ 0.66
CHMP1A-201ENST00000397901 SYAP1Q96A49 352 aaPredicted RBP19.19■□□□□ 0.66
CHMP1A-201ENST00000397901 USP44Q9H0E7 712 aa19.19■□□□□ 0.66
CHMP1A-201ENST00000397901 NUTM2GQ5VZR2 741 aa19.18■□□□□ 0.66
CHMP1A-201ENST00000397901 PHF8Q9UPP1 1060 aa19.18■□□□□ 0.66
CHMP1A-201ENST00000397901 NWD1Q149M9 1564 aa19.18■□□□□ 0.66
CHMP1A-201ENST00000397901 HOXC9P31274 260 aa19.18■□□□□ 0.66
CHMP1A-201ENST00000397901 ABTB2Q8N961 1025 aa19.18■□□□□ 0.66
CHMP1A-201ENST00000397901 ADGRL3Q9HAR2 1447 aa19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 GNAT3A8MTJ3 354 aa19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 LARP6Q9BRS8 491 aaKnown RBP19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 SOS1Q07889 1333 aaPredicted RBP19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 WDR33Q9C0J8 1336 aaKnown RBP19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 SPDYE4A6NLX3 237 aa19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 MPNDQ8N594 471 aa19.17■□□□□ 0.66
CHMP1A-201ENST00000397901 SURF6O75683 361 aaKnown RBP19.16■□□□□ 0.66
CHMP1A-201ENST00000397901 HSPA4P34932 840 aa19.16■□□□□ 0.66
CHMP1A-201ENST00000397901 SPTLC3Q9NUV7 552 aa19.16■□□□□ 0.66
CHMP1A-201ENST00000397901 FAM208AQ9UK61 1670 aaKnown RBP19.16■□□□□ 0.66
CHMP1A-201ENST00000397901 ZBTB7CA1YPR0 619 aa19.16■□□□□ 0.66
CHMP1A-201ENST00000397901 PHAXQ9H814 394 aaKnown RBP19.16■□□□□ 0.66
CHMP1A-201ENST00000397901 PPP1R42Q7Z4L9 355 aa19.15■□□□□ 0.66
CHMP1A-201ENST00000397901 IL17REQ8NFR9 667 aa19.15■□□□□ 0.66
CHMP1A-201ENST00000397901 RBM33Q96EV2 1170 aaKnown RBP19.15■□□□□ 0.66
CHMP1A-201ENST00000397901 LTV1Q96GA3 475 aaPredicted RBP19.15■□□□□ 0.66
CHMP1A-201ENST00000397901 FEZ1Q99689 392 aa19.15■□□□□ 0.66
CHMP1A-201ENST00000397901 RPAP1Q9BWH6 1393 aaPredicted RBP19.14■□□□□ 0.65
CHMP1A-201ENST00000397901 PHF14O94880 888 aa19.14■□□□□ 0.65
CHMP1A-201ENST00000397901 HDGFL1Q5TGJ6 251 aa19.14■□□□□ 0.65
CHMP1A-201ENST00000397901 SSH3Q8TE77 659 aa19.14■□□□□ 0.65
CHMP1A-201ENST00000397901 ANKRD7Q92527 254 aa19.14■□□□□ 0.65
CHMP1A-201ENST00000397901 IL17RAQ96F46 866 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms