RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 IVLP07476 585 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 IGHMBP2P38935 993 aaKnown RBP16.13■□□□□ 0.17
COL4A3-202ENST00000396578 GTF2A1P52655 376 aaPredicted RBP16.13■□□□□ 0.17
COL4A3-202ENST00000396578 ERBINQ96RT1 1412 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 STRN4Q9NRL3 753 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 SPDYE4A6NLX3 237 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 ZNF530Q6P9A1 599 aaPredicted RBP16.13■□□□□ 0.17
COL4A3-202ENST00000396578 DCAF8L1A6NGE4 600 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 MX1P20591 662 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 FAM114A1Q8IWE2 563 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 CKAP2LQ8IYA6 745 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 IKBKGQ9Y6K9 419 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 TMEM57Q8N5G2 664 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 ERICH3Q5RHP9 1530 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 PRPF4BQ13523 1007 aaKnown RBP16.12■□□□□ 0.17
COL4A3-202ENST00000396578 SSRP1Q08945 709 aaKnown RBP16.12■□□□□ 0.17
COL4A3-202ENST00000396578 SREK1Q8WXA9 508 aaKnown RBP16.12■□□□□ 0.17
COL4A3-202ENST00000396578 FERMT2Q96AC1 680 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 MTIF2P46199 727 aaKnown RBP16.12■□□□□ 0.17
COL4A3-202ENST00000396578 DAAM2Q86T65 1068 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 TSNARE1Q96NA8 513 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 PRAM1Q96QH2 718 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 ZNF692Q9BU19 519 aaPredicted RBP16.12■□□□□ 0.17
COL4A3-202ENST00000396578 COMMD10Q9Y6G5 202 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 IFI16Q16666 785 aaKnown RBP16.12■□□□□ 0.17
COL4A3-202ENST00000396578 NUTM1Q86Y26 1132 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 CPLX3Q8WVH0 158 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 ANKRD30BQ9BXX2 1392 aa16.12■□□□□ 0.17
COL4A3-202ENST00000396578 NCOA2Q15596 1464 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 A0A087WZG4 1122 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 PRPF40BQ6NWY9 871 aaKnown RBP16.11■□□□□ 0.17
COL4A3-202ENST00000396578 NAPBQ9H115 298 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 NKTRP30414 1462 aaKnown RBP16.11■□□□□ 0.17
COL4A3-202ENST00000396578 NOP2P46087 812 aaKnown RBP16.11■□□□□ 0.17
COL4A3-202ENST00000396578 NSRP1Q9H0G5 558 aaKnown RBP16.11■□□□□ 0.17
COL4A3-202ENST00000396578 CAVIN2O95810 425 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 CCDC155Q8N6L0 562 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 FERMT1Q9BQL6 677 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 MKNK2Q9HBH9 465 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 SLC12A7Q9Y666 1083 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 A0A1W2PRG0 241 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 FSIP1Q8NA03 581 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 AMPD3Q01432 767 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 KRT222Q8N1A0 295 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 PPP1R14CQ8TAE6 165 aa16.11■□□□□ 0.17
COL4A3-202ENST00000396578 ANKS4BQ8N8V4 417 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 CTCFLQ8NI51 663 aaPredicted RBP16.1■□□□□ 0.17
COL4A3-202ENST00000396578 CCDC171Q6TFL3 1326 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 FBF1Q8TES7 1133 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 PYM1Q9BRP8 204 aaKnown RBP16.1■□□□□ 0.17
COL4A3-202ENST00000396578 CKAP4Q07065 602 aaKnown RBP16.1■□□□□ 0.17
COL4A3-202ENST00000396578 ABCF2Q9UG63 623 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 NBPF1Q3BBV0 1214 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 CDK19Q9BWU1 502 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 LIMCH1Q9UPQ0 1083 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 EXOC6BQ9Y2D4 811 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 MINDY4BA8MYZ0 360 aa16.1■□□□□ 0.17
COL4A3-202ENST00000396578 TNPO1Q92973 898 aaKnown RBP16.1■□□□□ 0.17
COL4A3-202ENST00000396578 METTL24Q5JXM2 366 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 KANK3Q6NY19 840 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 SCLT1Q96NL6 688 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 GUCY1B3Q02153 619 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 IQCA1Q86XH1 822 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 ARFGAP3Q9NP61 516 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 HFM1A2PYH4 1435 aa16.09■□□□□ 0.17
COL4A3-202ENST00000396578 FANCD2Q9BXW9 1451 aa16.08■□□□□ 0.17
COL4A3-202ENST00000396578 CFAP70Q5T0N1 1121 aa16.08■□□□□ 0.16
COL4A3-202ENST00000396578 TOM1L2Q6ZVM7 507 aa16.08■□□□□ 0.16
COL4A3-202ENST00000396578 DDX54Q8TDD1 881 aaKnown RBP16.08■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC12Q8WUD4 166 aaPredicted RBP16.08■□□□□ 0.16
COL4A3-202ENST00000396578 CUL5Q93034 780 aa16.08■□□□□ 0.16
COL4A3-202ENST00000396578 CALML4Q96GE6 196 aa16.08■□□□□ 0.16
COL4A3-202ENST00000396578 ZFP91Q96JP5 570 aaPredicted RBP16.08■□□□□ 0.16
COL4A3-202ENST00000396578 PHF23Q9BUL5 403 aaPredicted RBP16.08■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC6Q16204 474 aa16.08■□□□□ 0.16
COL4A3-202ENST00000396578 POLR3DP05423 398 aaPredicted RBP16.08■□□□□ 0.16
COL4A3-202ENST00000396578 PPP1R1BQ9UD71 204 aaPredicted RBP16.08■□□□□ 0.16
COL4A3-202ENST00000396578 UBE2HP62256 183 aa16.08■□□□□ 0.16
COL4A3-202ENST00000396578 MSL1Q68DK7 614 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 EHMT1Q9H9B1 1298 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 UVSSAQ2YD98 709 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 TMOD2Q9NZR1 351 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 ZNF644Q9H582 1327 aaPredicted RBP16.07■□□□□ 0.16
COL4A3-202ENST00000396578 WDR97A6NE52 1622 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 GOLGA8BA8MQT2 603 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 ZNF213O14771 459 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 PUS7Q96PZ0 661 aaKnown RBP16.07■□□□□ 0.16
COL4A3-202ENST00000396578 KIAA0753Q2KHM9 967 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 CAVIN4Q5BKX8 364 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 SSFA2P28290 1259 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 PLVAPQ9BX97 442 aa16.07■□□□□ 0.16
COL4A3-202ENST00000396578 CATIPQ7Z7H3 387 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 SERPINA10Q9UK55 444 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 KIF4AO95239 1232 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 PPM1FP49593 454 aaPredicted RBP16.06■□□□□ 0.16
COL4A3-202ENST00000396578 GNG11P61952 73 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 GNAT3A8MTJ3 354 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC194A0A1B0GVG4 234 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms