RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 KCPQ6ZWJ8 1503 aa34.05■■■■□ 3.04
MSX1-201ENST00000382723 ATG3Q9NT62 314 aa34.04■■■■□ 3.04
MSX1-201ENST00000382723 DOT1LQ8TEK3 1739 aa34.03■■■■□ 3.04
MSX1-201ENST00000382723 ITGB4P16144 1822 aa34.03■■■■□ 3.04
MSX1-201ENST00000382723 F6X3S4 739 aa34.03■■■■□ 3.04
MSX1-201ENST00000382723 PROSER3Q2NL68 480 aa34.03■■■■□ 3.04
MSX1-201ENST00000382723 THSD7AQ9UPZ6 1657 aa34.02■■■■□ 3.04
MSX1-201ENST00000382723 FBXO41Q8TF61 875 aa34■■■■□ 3.03
MSX1-201ENST00000382723 UBR2Q8IWV8 1755 aa34■■■■□ 3.03
MSX1-201ENST00000382723 SLC4A10Q6U841 1118 aa34■■■■□ 3.03
MSX1-201ENST00000382723 AAMPQ13685 434 aa33.98■■■■□ 3.03
MSX1-201ENST00000382723 RBM42Q9BTD8 480 aaKnown RBP33.98■■■■□ 3.03
MSX1-201ENST00000382723 DDX21Q9NR30 783 aaKnown RBP eCLIP33.98■■■■□ 3.03
MSX1-201ENST00000382723 PDIA6Q15084 440 aa33.98■■■■□ 3.03
MSX1-201ENST00000382723 INTS3Q68E01 1043 aaKnown RBP33.97■■■■□ 3.03
MSX1-201ENST00000382723 HYPKQ9NX55 129 aa33.97■■■■□ 3.03
MSX1-201ENST00000382723 ONECUT3O60422 494 aaPredicted RBP33.96■■■■□ 3.03
MSX1-201ENST00000382723 MYL6BP14649 208 aa33.96■■■■□ 3.03
MSX1-201ENST00000382723 SEPT12Q8IYM1 358 aa33.96■■■■□ 3.03
MSX1-201ENST00000382723 PIP4K2AP48426 406 aaPredicted RBP33.95■■■■□ 3.03
MSX1-201ENST00000382723 KAT6BQ8WYB5 2073 aa33.95■■■■□ 3.03
MSX1-201ENST00000382723 FAM182BQ5T319 152 aa33.94■■■■□ 3.02
MSX1-201ENST00000382723 ZBTB7BO15156 539 aaPredicted RBP33.94■■■■□ 3.02
MSX1-201ENST00000382723 KCNQ2O43526 872 aa33.94■■■■□ 3.02
MSX1-201ENST00000382723 CACNA1FO60840 1977 aa33.94■■■■□ 3.02
MSX1-201ENST00000382723 ZBTB40Q9NUA8 1239 aa33.93■■■■□ 3.02
MSX1-201ENST00000382723 PCDHB15Q9Y5E8 787 aa33.92■■■■□ 3.02
MSX1-201ENST00000382723 AIMP1Q12904 312 aaKnown RBP33.91■■■■□ 3.02
MSX1-201ENST00000382723 ZNF772Q68DY9 489 aaPredicted RBP33.91■■■■□ 3.02
MSX1-201ENST00000382723 CCT4P50991 539 aaKnown RBP33.91■■■■□ 3.02
MSX1-201ENST00000382723 VSIG10Q8N0Z9 540 aa33.9■■■■□ 3.02
MSX1-201ENST00000382723 CHMP4BQ9H444 224 aaKnown RBP33.9■■■■□ 3.02
MSX1-201ENST00000382723 LAMB4A4D0S4 1761 aa33.89■■■■□ 3.02
MSX1-201ENST00000382723 PI4KAP2A4QPH2 592 aa33.89■■■■□ 3.02
MSX1-201ENST00000382723 PI4KAP1Q8N8J0 262 aa33.89■■■■□ 3.02
MSX1-201ENST00000382723 DNAJC10Q8IXB1 793 aa33.89■■■■□ 3.02
MSX1-201ENST00000382723 A1BGP04217 495 aa33.87■■■■□ 3.01
MSX1-201ENST00000382723 XAGE3Q8WTP9 111 aa33.87■■■■□ 3.01
MSX1-201ENST00000382723 SLC4A9Q96Q91 983 aa33.87■■■■□ 3.01
MSX1-201ENST00000382723 TEX13AQ9BXU3 409 aaPredicted RBP33.87■■■■□ 3.01
MSX1-201ENST00000382723 ADCY9O60503 1353 aa33.86■■■■□ 3.01
MSX1-201ENST00000382723 NBPF26B4DH59 902 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 NBPF14Q5TI25 921 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 NBPF10Q6P3W6 841 aaKnown RBP33.85■■■■□ 3.01
MSX1-201ENST00000382723 COPS6Q7L5N1 327 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 NBPF15Q8N660 670 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 DNAAF4Q8WXU2 420 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 IGHDP01880 384 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 LRP10Q7Z4F1 713 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 C1orf115Q9H7X2 142 aa33.85■■■■□ 3.01
MSX1-201ENST00000382723 ERBB4Q15303 1308 aa33.84■■■■□ 3.01
MSX1-201ENST00000382723 DDX58O95786 925 aaKnown RBP33.84■■■■□ 3.01
MSX1-201ENST00000382723 MAP3K2Q9Y2U5 619 aa33.84■■■■□ 3.01
MSX1-201ENST00000382723 KSR2Q6VAB6 950 aa33.83■■■■□ 3.01
MSX1-201ENST00000382723 KDM2BQ8NHM5 1336 aa33.83■■■■□ 3.01
MSX1-201ENST00000382723 PXDNLA1KZ92 1463 aa33.82■■■■□ 3
MSX1-201ENST00000382723 STARD3NLO95772 234 aa33.82■■■■□ 3
MSX1-201ENST00000382723 CENPQQ7L2Z9 268 aaPredicted RBP33.82■■■■□ 3
MSX1-201ENST00000382723 PTF1AQ7RTS3 328 aa33.82■■■■□ 3
MSX1-201ENST00000382723 MEIS3Q99687 375 aa33.81■■■■□ 3
MSX1-201ENST00000382723 RBM6P78332 1123 aaKnown RBP33.81■■■■□ 3
MSX1-201ENST00000382723 PALLDQ8WX93 1383 aa33.8■■■■□ 3
MSX1-201ENST00000382723 RIC3Q7Z5B4 369 aa33.79■■■■□ 3
MSX1-201ENST00000382723 SMARCC1Q92922 1105 aaPredicted RBP33.79■■■■□ 3
MSX1-201ENST00000382723 SRCIN1Q9C0H9 1055 aa33.79■■■■□ 3
MSX1-201ENST00000382723 BEND3Q5T5X7 828 aa33.78■■■■□ 3
MSX1-201ENST00000382723 LOC102724428A0A0B4J2F2 783 aa33.77■■■■□ 3
MSX1-201ENST00000382723 SIK1P57059 783 aa33.77■■■■□ 3
MSX1-201ENST00000382723 CYP19A1P11511 503 aaPredicted RBP33.77■■■■□ 3
MSX1-201ENST00000382723 ATP6V1AP38606 617 aa33.77■■■■□ 3
MSX1-201ENST00000382723 RWDD1Q9H446 243 aaPredicted RBP33.77■■■■□ 3
MSX1-201ENST00000382723 ANKRD13DQ6ZTN6 518 aa33.75■■■□□ 2.99
MSX1-201ENST00000382723 ZNF330Q9Y3S2 320 aaPredicted RBP33.75■■■□□ 2.99
MSX1-201ENST00000382723 KRT27Q7Z3Y8 459 aa33.75■■■□□ 2.99
MSX1-201ENST00000382723 PELP1Q8IZL8 1130 aaKnown RBP33.74■■■□□ 2.99
MSX1-201ENST00000382723 ATP10DQ9P241 1426 aa33.73■■■□□ 2.99
MSX1-201ENST00000382723 TTLL7Q6ZT98 887 aa33.72■■■□□ 2.99
MSX1-201ENST00000382723 TJP1Q07157 1748 aa33.71■■■□□ 2.99
MSX1-201ENST00000382723 NHSQ6T4R5 1651 aa33.71■■■□□ 2.99
MSX1-201ENST00000382723 RXRBP28702 533 aa33.7■■■□□ 2.99
MSX1-201ENST00000382723 HDAC1Q13547 482 aaPredicted RBP33.7■■■□□ 2.99
MSX1-201ENST00000382723 ITPK1Q13572 414 aa33.7■■■□□ 2.99
MSX1-201ENST00000382723 USP44Q9H0E7 712 aa33.7■■■□□ 2.99
MSX1-201ENST00000382723 GNAI3P08754 354 aa33.69■■■□□ 2.98
MSX1-201ENST00000382723 CWF19L2Q2TBE0 894 aaKnown RBP33.69■■■□□ 2.98
MSX1-201ENST00000382723 PLBD2Q8NHP8 589 aa33.69■■■□□ 2.98
MSX1-201ENST00000382723 N4BP2Q86UW6 1770 aaPredicted RBP33.68■■■□□ 2.98
MSX1-201ENST00000382723 MYD88Q99836 296 aa33.68■■■□□ 2.98
MSX1-201ENST00000382723 METTL22Q9BUU2 404 aaPredicted RBP33.68■■■□□ 2.98
MSX1-201ENST00000382723 ZBTB1Q9Y2K1 713 aa33.68■■■□□ 2.98
MSX1-201ENST00000382723 NEXNQ0ZGT2 675 aa33.67■■■□□ 2.98
MSX1-201ENST00000382723 LINS1Q8NG48 757 aa33.67■■■□□ 2.98
MSX1-201ENST00000382723 RGS17Q9UGC6 210 aaPredicted RBP33.67■■■□□ 2.98
MSX1-201ENST00000382723 ALDH1L1O75891 902 aa33.66■■■□□ 2.98
MSX1-201ENST00000382723 GNAI2P04899 355 aa33.66■■■□□ 2.98
MSX1-201ENST00000382723 FAM196AQ6ZSG2 479 aa33.66■■■□□ 2.98
MSX1-201ENST00000382723 BRWD3Q6RI45 1802 aa33.66■■■□□ 2.98
MSX1-201ENST00000382723 UBTFL1P0CB47 393 aaPredicted RBP33.65■■■□□ 2.98
MSX1-201ENST00000382723 SIRT2Q8IXJ6 389 aa33.65■■■□□ 2.98
MSX1-201ENST00000382723 ZBTB3Q9H5J0 574 aa33.65■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms