RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 SRCIN1Q9C0H9 1055 aa24.2■■□□□ 1.47
SSU72-204ENST00000378726 DDX21Q9NR30 783 aaKnown RBP eCLIP24.2■■□□□ 1.47
SSU72-204ENST00000378726 FMNL2Q96PY5 1086 aa24.2■■□□□ 1.46
SSU72-204ENST00000378726 USP44Q9H0E7 712 aa24.2■■□□□ 1.46
SSU72-204ENST00000378726 MRC1P22897 1456 aa24.2■■□□□ 1.46
SSU72-204ENST00000378726 SNRPA1P09661 255 aaKnown RBP24.19■■□□□ 1.46
SSU72-204ENST00000378726 PDIA6Q15084 440 aa24.19■■□□□ 1.46
SSU72-204ENST00000378726 PXDNLA1KZ92 1463 aa24.19■■□□□ 1.46
SSU72-204ENST00000378726 HMMRO75330 724 aa24.18■■□□□ 1.46
SSU72-204ENST00000378726 BEND3Q5T5X7 828 aa24.18■■□□□ 1.46
SSU72-204ENST00000378726 USP16Q9Y5T5 823 aa24.18■■□□□ 1.46
SSU72-204ENST00000378726 ADAMTS2O95450 1211 aa24.17■■□□□ 1.46
SSU72-204ENST00000378726 RTN4Q9NQC3 1192 aaKnown RBP24.17■■□□□ 1.46
SSU72-204ENST00000378726 COL22A1Q8NFW1 1626 aaPredicted RBP24.17■■□□□ 1.46
SSU72-204ENST00000378726 KSR2Q6VAB6 950 aa24.16■■□□□ 1.46
SSU72-204ENST00000378726 ADCY9O60503 1353 aa24.16■■□□□ 1.46
SSU72-204ENST00000378726 COL14A1Q05707 1796 aaKnown RBP24.15■■□□□ 1.46
SSU72-204ENST00000378726 MAP3K2Q9Y2U5 619 aa24.15■■□□□ 1.46
SSU72-204ENST00000378726 UBTFL1P0CB47 393 aaPredicted RBP24.15■■□□□ 1.46
SSU72-204ENST00000378726 AIMP1Q12904 312 aaKnown RBP24.15■■□□□ 1.46
SSU72-204ENST00000378726 SEC24BO95487 1268 aa24.14■■□□□ 1.46
SSU72-204ENST00000378726 LRRFIP2Q9Y608 721 aaKnown RBP24.14■■□□□ 1.46
SSU72-204ENST00000378726 FRAT2O75474 233 aaPredicted RBP24.14■■□□□ 1.45
SSU72-204ENST00000378726 MYL6BP14649 208 aa24.14■■□□□ 1.45
SSU72-204ENST00000378726 ATP8B2P98198 1209 aa24.14■■□□□ 1.45
SSU72-204ENST00000378726 ANO8Q9HCE9 1232 aaPredicted RBP24.14■■□□□ 1.45
SSU72-204ENST00000378726 DDX58O95786 925 aaKnown RBP24.13■■□□□ 1.45
SSU72-204ENST00000378726 PHLPP1O60346 1717 aa24.13■■□□□ 1.45
SSU72-204ENST00000378726 NUTM2BA6NNL0 878 aaPredicted RBP24.12■■□□□ 1.45
SSU72-204ENST00000378726 NUTM2EB1AL46 878 aaPredicted RBP24.12■■□□□ 1.45
SSU72-204ENST00000378726 UBAP1LF5GYI3 381 aa24.12■■□□□ 1.45
SSU72-204ENST00000378726 NUTM2AQ8IVF1 878 aaPredicted RBP24.12■■□□□ 1.45
SSU72-204ENST00000378726 COL16A1Q07092 1604 aaPredicted RBP24.1■■□□□ 1.45
SSU72-204ENST00000378726 NBPF7P0C2Y1 421 aaPredicted RBP24.1■■□□□ 1.45
SSU72-204ENST00000378726 BRPF3Q9ULD4 1205 aa24.1■■□□□ 1.45
SSU72-204ENST00000378726 PNMA6EA0A0J9YXQ4 647 aa24.09■■□□□ 1.45
SSU72-204ENST00000378726 APBB1O00213 710 aa24.09■■□□□ 1.45
SSU72-204ENST00000378726 COPS6Q7L5N1 327 aa24.09■■□□□ 1.45
SSU72-204ENST00000378726 EXOC5O00471 708 aa24.08■■□□□ 1.45
SSU72-204ENST00000378726 RIC3Q7Z5B4 369 aa24.08■■□□□ 1.45
SSU72-204ENST00000378726 XAGE3Q8WTP9 111 aa24.08■■□□□ 1.45
SSU72-204ENST00000378726 ALDH1L1O75891 902 aa24.08■■□□□ 1.45
SSU72-204ENST00000378726 C5P01031 1676 aa24.07■■□□□ 1.44
SSU72-204ENST00000378726 PIP4K2AP48426 406 aaPredicted RBP24.07■■□□□ 1.44
SSU72-204ENST00000378726 C16orf71Q8IYS4 520 aaPredicted RBP24.07■■□□□ 1.44
SSU72-204ENST00000378726 TMOD3Q9NYL9 352 aa24.07■■□□□ 1.44
SSU72-204ENST00000378726 PTCD1O75127 700 aaKnown RBP24.07■■□□□ 1.44
SSU72-204ENST00000378726 DISP2A7MBM2 1401 aa24.07■■□□□ 1.44
SSU72-204ENST00000378726 SHANK3Q9BYB0 1731 aa24.07■■□□□ 1.44
SSU72-204ENST00000378726 N4BP2Q86UW6 1770 aaPredicted RBP24.06■■□□□ 1.44
SSU72-204ENST00000378726 LRP10Q7Z4F1 713 aa24.06■■□□□ 1.44
SSU72-204ENST00000378726 SMARCA5O60264 1052 aaPredicted RBP24.06■■□□□ 1.44
SSU72-204ENST00000378726 CWF19L2Q2TBE0 894 aaKnown RBP24.06■■□□□ 1.44
SSU72-204ENST00000378726 BMP2KLQ5H9B9 411 aa24.06■■□□□ 1.44
SSU72-204ENST00000378726 LINS1Q8NG48 757 aa24.06■■□□□ 1.44
SSU72-204ENST00000378726 C9orf78Q9NZ63 289 aaPredicted RBP24.06■■□□□ 1.44
SSU72-204ENST00000378726 PLEKHM2Q8IWE5 1019 aa24.05■■□□□ 1.44
SSU72-204ENST00000378726 EXOC6BQ9Y2D4 811 aa24.05■■□□□ 1.44
SSU72-204ENST00000378726 ANKRD13DQ6ZTN6 518 aa24.04■■□□□ 1.44
SSU72-204ENST00000378726 PPP1R42Q7Z4L9 355 aa24.03■■□□□ 1.44
SSU72-204ENST00000378726 SSH3Q8TE77 659 aa24.03■■□□□ 1.44
SSU72-204ENST00000378726 PIGBQ92521 554 aa24.03■■□□□ 1.44
SSU72-204ENST00000378726 SPATA31A1Q5TZJ5 1347 aa24.02■■□□□ 1.44
SSU72-204ENST00000378726 NEXNQ0ZGT2 675 aa24.02■■□□□ 1.44
SSU72-204ENST00000378726 UPF2Q9HAU5 1272 aaKnown RBP24.01■■□□□ 1.43
SSU72-204ENST00000378726 THRAP3Q9Y2W1 955 aaKnown RBP24.01■■□□□ 1.43
SSU72-204ENST00000378726 IGKV5-2P06315 115 aa24■■□□□ 1.43
SSU72-204ENST00000378726 OTUD7AQ8TE49 926 aaPredicted RBP24■■□□□ 1.43
SSU72-204ENST00000378726 METTL22Q9BUU2 404 aaPredicted RBP24■■□□□ 1.43
SSU72-204ENST00000378726 CDCA7Q9BWT1 371 aaPredicted RBP24■■□□□ 1.43
SSU72-204ENST00000378726 HDAC5Q9UQL6 1122 aa24■■□□□ 1.43
SSU72-204ENST00000378726 ERBB4Q15303 1308 aa24■■□□□ 1.43
SSU72-204ENST00000378726 NBPF26B4DH59 902 aa24■■□□□ 1.43
SSU72-204ENST00000378726 NBPF14Q5TI25 921 aa24■■□□□ 1.43
SSU72-204ENST00000378726 NBPF10Q6P3W6 841 aaKnown RBP24■■□□□ 1.43
SSU72-204ENST00000378726 NBPF15Q8N660 670 aa24■■□□□ 1.43
SSU72-204ENST00000378726 ASAP1Q9ULH1 1129 aa24■■□□□ 1.43
SSU72-204ENST00000378726 SRGAP3O43295 1099 aa23.99■■□□□ 1.43
SSU72-204ENST00000378726 A1BGP04217 495 aa23.99■■□□□ 1.43
SSU72-204ENST00000378726 POLA2Q14181 598 aa23.99■■□□□ 1.43
SSU72-204ENST00000378726 KCPQ6ZWJ8 1503 aa23.99■■□□□ 1.43
SSU72-204ENST00000378726 MYD88Q99836 296 aa23.99■■□□□ 1.43
SSU72-204ENST00000378726 LRRCC1Q9C099 1032 aa23.99■■□□□ 1.43
SSU72-204ENST00000378726 GRM8O00222 908 aa23.98■■□□□ 1.43
SSU72-204ENST00000378726 ATG3Q9NT62 314 aa23.98■■□□□ 1.43
SSU72-204ENST00000378726 TNS2Q63HR2 1409 aa23.97■■□□□ 1.43
SSU72-204ENST00000378726 GLI3P10071 1580 aa23.97■■□□□ 1.43
SSU72-204ENST00000378726 NEURL1BA8MQ27 555 aa23.97■■□□□ 1.43
SSU72-204ENST00000378726 CCDC9Q9Y3X0 531 aaKnown RBP23.97■■□□□ 1.43
SSU72-204ENST00000378726 BECN1Q14457 450 aa23.96■■□□□ 1.43
SSU72-204ENST00000378726 PLCH1Q4KWH8 1693 aa23.96■■□□□ 1.43
SSU72-204ENST00000378726 IBTKQ9P2D0 1353 aaPredicted RBP23.96■■□□□ 1.43
SSU72-204ENST00000378726 TOGARAM1Q9Y4F4 1720 aa23.96■■□□□ 1.43
SSU72-204ENST00000378726 UTYO14607 1347 aa23.96■■□□□ 1.43
SSU72-204ENST00000378726 SURF6O75683 361 aaKnown RBP23.96■■□□□ 1.43
SSU72-204ENST00000378726 DDB1Q16531 1140 aa23.96■■□□□ 1.43
SSU72-204ENST00000378726 PLBD2Q8NHP8 589 aa23.96■■□□□ 1.43
SSU72-204ENST00000378726 SPATA31A5Q5VU36 1347 aa23.95■■□□□ 1.43
SSU72-204ENST00000378726 SPATA31A7Q8IWB4 1347 aa23.95■■□□□ 1.43
SSU72-204ENST00000378726 GSPT1P15170 499 aaKnown RBP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms