RNA–Protein interactions for RNA: ENST00000349379.5

SNX3-202, Transcript of sorting nexin 3, humanhuman

TSL 2 BASIC

Gene SNX3, Length 890 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-202ENST00000349379 SOS1Q07889 1333 aaPredicted RBP29.09■■■□□ 2.25
SNX3-202ENST00000349379 ZBTB1Q9Y2K1 713 aa29.08■■■□□ 2.25
SNX3-202ENST00000349379 POLD1P28340 1107 aa29.07■■■□□ 2.24
SNX3-202ENST00000349379 MSL1Q68DK7 614 aa29.07■■■□□ 2.24
SNX3-202ENST00000349379 ARXQ96QS3 562 aa29.07■■■□□ 2.24
SNX3-202ENST00000349379 MIS18AQ9NYP9 233 aa29.07■■■□□ 2.24
SNX3-202ENST00000349379 STARD3NLO95772 234 aa29.06■■■□□ 2.24
SNX3-202ENST00000349379 NEUROD2Q15784 382 aa29.05■■■□□ 2.24
SNX3-202ENST00000349379 BABAM1Q9NWV8 329 aa29.04■■■□□ 2.24
SNX3-202ENST00000349379 APAF1O14727 1248 aa29.03■■■□□ 2.24
SNX3-202ENST00000349379 SNRPA1P09661 255 aaKnown RBP29.03■■■□□ 2.24
SNX3-202ENST00000349379 COL15A1P39059 1388 aa29.02■■■□□ 2.24
SNX3-202ENST00000349379 RFC4P35249 363 aa29.02■■■□□ 2.24
SNX3-202ENST00000349379 USP16Q9Y5T5 823 aa29.02■■■□□ 2.24
SNX3-202ENST00000349379 USP42Q9H9J4 1324 aaKnown RBP29.01■■■□□ 2.23
SNX3-202ENST00000349379 PRAMEF22A3QJZ6 481 aa29.01■■■□□ 2.23
SNX3-202ENST00000349379 EIF4A1P60842 406 aaKnown RBP29.01■■■□□ 2.23
SNX3-202ENST00000349379 SCN7AQ01118 1682 aa29■■■□□ 2.23
SNX3-202ENST00000349379 GYS1P13807 737 aa29■■■□□ 2.23
SNX3-202ENST00000349379 EIF5P55010 431 aaKnown RBP29■■■□□ 2.23
SNX3-202ENST00000349379 FHDC1Q9C0D6 1143 aaPredicted RBP29■■■□□ 2.23
SNX3-202ENST00000349379 KIF13BQ9NQT8 1826 aa28.99■■■□□ 2.23
SNX3-202ENST00000349379 BCORQ6W2J9 1755 aa28.98■■■□□ 2.23
SNX3-202ENST00000349379 CANXP27824 592 aaKnown RBP28.98■■■□□ 2.23
SNX3-202ENST00000349379 SYT17Q9BSW7 474 aa28.98■■■□□ 2.23
SNX3-202ENST00000349379 TSPYL4Q9UJ04 414 aa28.98■■■□□ 2.23
SNX3-202ENST00000349379 A1BGP04217 495 aa28.97■■■□□ 2.23
SNX3-202ENST00000349379 NLGN1Q8N2Q7 840 aa28.97■■■□□ 2.23
SNX3-202ENST00000349379 SRP68Q9UHB9 627 aaKnown RBP28.97■■■□□ 2.23
SNX3-202ENST00000349379 GIGYF1O75420 1035 aaPredicted RBP28.96■■■□□ 2.23
SNX3-202ENST00000349379 IL6STP40189 918 aaPredicted RBP28.96■■■□□ 2.23
SNX3-202ENST00000349379 CHL1O00533 1208 aa28.95■■■□□ 2.22
SNX3-202ENST00000349379 NARFQ9UHQ1 456 aa28.95■■■□□ 2.22
SNX3-202ENST00000349379 AFDNP55196 1824 aaKnown RBP28.92■■■□□ 2.22
SNX3-202ENST00000349379 MMP10P09238 476 aa28.92■■■□□ 2.22
SNX3-202ENST00000349379 A0A087WZG4 1122 aa28.91■■■□□ 2.22
SNX3-202ENST00000349379 FKBP8Q14318 412 aa28.91■■■□□ 2.22
SNX3-202ENST00000349379 NCBP3Q53F19 620 aaKnown RBP28.91■■■□□ 2.22
SNX3-202ENST00000349379 USPL1Q5W0Q7 1092 aa28.91■■■□□ 2.22
SNX3-202ENST00000349379 BCL2L12Q9HB09 334 aa28.91■■■□□ 2.22
SNX3-202ENST00000349379 NRXN2Q9P2S2 1712 aa28.91■■■□□ 2.22
SNX3-202ENST00000349379 NBPF26B4DH59 902 aa28.9■■■□□ 2.22
SNX3-202ENST00000349379 ZPR1O75312 459 aa28.9■■■□□ 2.22
SNX3-202ENST00000349379 CCDC27Q2M243 656 aa28.9■■■□□ 2.22
SNX3-202ENST00000349379 NBPF10Q6P3W6 841 aaKnown RBP28.9■■■□□ 2.22
SNX3-202ENST00000349379 NBPF15Q8N660 670 aa28.9■■■□□ 2.22
SNX3-202ENST00000349379 CFAP44Q96MT7 982 aa28.9■■■□□ 2.22
SNX3-202ENST00000349379 KIAA1551Q9HCM1 1747 aa28.9■■■□□ 2.22
SNX3-202ENST00000349379 ZNF853P0CG23 659 aa28.89■■■□□ 2.22
SNX3-202ENST00000349379 PIP4K2AP48426 406 aaPredicted RBP28.87■■■□□ 2.21
SNX3-202ENST00000349379 CD2APQ9Y5K6 639 aa28.87■■■□□ 2.21
SNX3-202ENST00000349379 TM4SF1P30408 202 aa28.86■■■□□ 2.21
SNX3-202ENST00000349379 CALD1Q05682 793 aaKnown RBP28.86■■■□□ 2.21
SNX3-202ENST00000349379 IFT57Q9NWB7 429 aa28.85■■■□□ 2.21
SNX3-202ENST00000349379 LAS1LQ9Y4W2 734 aaKnown RBP28.85■■■□□ 2.21
SNX3-202ENST00000349379 C10orf71Q711Q0 1435 aa28.85■■■□□ 2.21
SNX3-202ENST00000349379 DDR1Q08345 913 aa28.84■■■□□ 2.21
SNX3-202ENST00000349379 FAM9BQ8IZU0 186 aa28.84■■■□□ 2.21
SNX3-202ENST00000349379 KLHL34Q8N239 644 aa28.84■■■□□ 2.21
SNX3-202ENST00000349379 NLGN2Q8NFZ4 835 aa28.84■■■□□ 2.21
SNX3-202ENST00000349379 ZNF330Q9Y3S2 320 aaPredicted RBP28.84■■■□□ 2.21
SNX3-202ENST00000349379 ERBB4Q15303 1308 aa28.84■■■□□ 2.21
SNX3-202ENST00000349379 MBIPQ9NS73 344 aa28.83■■■□□ 2.21
SNX3-202ENST00000349379 TBC1D2BQ9UPU7 963 aa28.83■■■□□ 2.21
SNX3-202ENST00000349379 NUP98P52948 1817 aa28.83■■■□□ 2.21
SNX3-202ENST00000349379 CAMTA2O94983 1202 aa28.82■■■□□ 2.2
SNX3-202ENST00000349379 WWC1Q8IX03 1113 aa28.82■■■□□ 2.2
SNX3-202ENST00000349379 PARP3Q9Y6F1 533 aa28.82■■■□□ 2.2
SNX3-202ENST00000349379 BRCA1P38398 1863 aaKnown RBP28.81■■■□□ 2.2
SNX3-202ENST00000349379 N4BP2Q86UW6 1770 aaPredicted RBP28.81■■■□□ 2.2
SNX3-202ENST00000349379 CCER2I3L3R5 266 aa28.81■■■□□ 2.2
SNX3-202ENST00000349379 POLRMTO00411 1230 aaKnown RBP28.81■■■□□ 2.2
SNX3-202ENST00000349379 GNAI1P63096 354 aa28.81■■■□□ 2.2
SNX3-202ENST00000349379 NFIXQ14938 502 aa28.81■■■□□ 2.2
SNX3-202ENST00000349379 KRT24Q2M2I5 525 aa28.81■■■□□ 2.2
SNX3-202ENST00000349379 DZIP3Q86Y13 1208 aaKnown RBP28.81■■■□□ 2.2
SNX3-202ENST00000349379 NPM2Q86SE8 214 aaKnown RBP28.8■■■□□ 2.2
SNX3-202ENST00000349379 HOXB7P09629 217 aa28.79■■■□□ 2.2
SNX3-202ENST00000349379 SENP3-EIF4A1A0A087X0R7 540 aa28.78■■■□□ 2.2
SNX3-202ENST00000349379 RGL2O15211 777 aa28.78■■■□□ 2.2
SNX3-202ENST00000349379 PDIA6Q15084 440 aa28.77■■■□□ 2.2
SNX3-202ENST00000349379 LRP10Q7Z4F1 713 aa28.77■■■□□ 2.2
SNX3-202ENST00000349379 IL16Q14005 1332 aa28.75■■■□□ 2.19
SNX3-202ENST00000349379 PXDNLA1KZ92 1463 aa28.75■■■□□ 2.19
SNX3-202ENST00000349379 TBC1D9BQ66K14 1250 aa28.75■■■□□ 2.19
SNX3-202ENST00000349379 CLEC4GQ6UXB4 293 aa28.75■■■□□ 2.19
SNX3-202ENST00000349379 ANKRD31Q8N7Z5 1873 aa28.74■■■□□ 2.19
SNX3-202ENST00000349379 EIF2S2P20042 333 aaKnown RBP28.74■■■□□ 2.19
SNX3-202ENST00000349379 NGEFQ8N5V2 710 aa28.74■■■□□ 2.19
SNX3-202ENST00000349379 DIEXFQ68CQ4 756 aaKnown RBP28.73■■■□□ 2.19
SNX3-202ENST00000349379 CHD4Q14839 1912 aa28.73■■■□□ 2.19
SNX3-202ENST00000349379 DLEC1Q9Y238 1755 aa28.73■■■□□ 2.19
SNX3-202ENST00000349379 MYL6BP14649 208 aa28.72■■■□□ 2.19
SNX3-202ENST00000349379 DUSP27Q5VZP5 1158 aa28.72■■■□□ 2.19
SNX3-202ENST00000349379 TGFB2P61812 414 aa28.71■■■□□ 2.19
SNX3-202ENST00000349379 WDR63Q8IWG1 891 aa28.71■■■□□ 2.19
SNX3-202ENST00000349379 CARMIL3Q8ND23 1372 aa28.71■■■□□ 2.19
SNX3-202ENST00000349379 ANKRD36CQ5JPF3 1778 aa28.7■■■□□ 2.19
SNX3-202ENST00000349379 SERPINB2P05120 415 aa28.7■■■□□ 2.18
SNX3-202ENST00000349379 PROSER3Q2NL68 480 aa28.7■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms