RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 MAPK8IP3Q9UPT6 1336 aa20.38■□□□□ 0.85
VAPA-201ENST00000340541 ZNF496Q96IT1 587 aaPredicted RBP20.38■□□□□ 0.85
VAPA-201ENST00000340541 PARP3Q9Y6F1 533 aa20.38■□□□□ 0.85
VAPA-201ENST00000340541 KCNQ3O43525 872 aa20.37■□□□□ 0.85
VAPA-201ENST00000340541 CRKLP46109 303 aaKnown RBP20.37■□□□□ 0.85
VAPA-201ENST00000340541 CCDC184Q52MB2 194 aa20.37■□□□□ 0.85
VAPA-201ENST00000340541 INTS5Q6P9B9 1019 aaKnown RBP20.37■□□□□ 0.85
VAPA-201ENST00000340541 VSIG10Q8N0Z9 540 aa20.37■□□□□ 0.85
VAPA-201ENST00000340541 ADAMTS8Q9UP79 889 aa20.37■□□□□ 0.85
VAPA-201ENST00000340541 BTBD11A6QL63 1104 aa20.36■□□□□ 0.85
VAPA-201ENST00000340541 CYP19A1P11511 503 aaPredicted RBP20.36■□□□□ 0.85
VAPA-201ENST00000340541 WDR43Q15061 677 aaKnown RBP eCLIP20.36■□□□□ 0.85
VAPA-201ENST00000340541 TTC5Q8N0Z6 440 aa20.36■□□□□ 0.85
VAPA-201ENST00000340541 C4AP0C0L4 1744 aa20.36■□□□□ 0.85
VAPA-201ENST00000340541 HEG1Q9ULI3 1381 aa20.35■□□□□ 0.85
VAPA-201ENST00000340541 CCDC146Q8IYE0 955 aa20.35■□□□□ 0.85
VAPA-201ENST00000340541 PXDNLA1KZ92 1463 aa20.35■□□□□ 0.85
VAPA-201ENST00000340541 C10orf71Q711Q0 1435 aa20.35■□□□□ 0.85
VAPA-201ENST00000340541 THUMPD2Q9BTF0 503 aaKnown RBP20.34■□□□□ 0.85
VAPA-201ENST00000340541 A0A0G2JLW4 131 aa20.33■□□□□ 0.85
VAPA-201ENST00000340541 TMPOP42166 694 aaKnown RBP20.33■□□□□ 0.85
VAPA-201ENST00000340541 KDM3BQ7LBC6 1761 aa20.33■□□□□ 0.84
VAPA-201ENST00000340541 USP42Q9H9J4 1324 aaKnown RBP20.32■□□□□ 0.84
VAPA-201ENST00000340541 TAF7Q15545 349 aaPredicted RBP20.32■□□□□ 0.84
VAPA-201ENST00000340541 RUNDC1Q96C34 613 aa20.32■□□□□ 0.84
VAPA-201ENST00000340541 RIPK4P57078 832 aa20.31■□□□□ 0.84
VAPA-201ENST00000340541 FMNL2Q96PY5 1086 aa20.31■□□□□ 0.84
VAPA-201ENST00000340541 WWC3Q9ULE0 1092 aa20.31■□□□□ 0.84
VAPA-201ENST00000340541 BCS1LQ9Y276 419 aa20.31■□□□□ 0.84
VAPA-201ENST00000340541 KIAA1551Q9HCM1 1747 aa20.3■□□□□ 0.84
VAPA-201ENST00000340541 ANP32CO43423 234 aa20.3■□□□□ 0.84
VAPA-201ENST00000340541 DPEP1P16444 411 aa20.3■□□□□ 0.84
VAPA-201ENST00000340541 ZBTB1Q9Y2K1 713 aa20.3■□□□□ 0.84
VAPA-201ENST00000340541 RRP7AQ9Y3A4 280 aaKnown RBP20.3■□□□□ 0.84
VAPA-201ENST00000340541 SOS1Q07889 1333 aaPredicted RBP20.29■□□□□ 0.84
VAPA-201ENST00000340541 MIS18AQ9NYP9 233 aa20.29■□□□□ 0.84
VAPA-201ENST00000340541 N4BP2Q86UW6 1770 aaPredicted RBP20.29■□□□□ 0.84
VAPA-201ENST00000340541 ZPR1O75312 459 aa20.28■□□□□ 0.84
VAPA-201ENST00000340541 KCNA3P22001 575 aa20.28■□□□□ 0.84
VAPA-201ENST00000340541 TM4SF1P30408 202 aa20.28■□□□□ 0.84
VAPA-201ENST00000340541 FKBP8Q14318 412 aa20.28■□□□□ 0.84
VAPA-201ENST00000340541 PIM2Q9P1W9 311 aa20.28■□□□□ 0.84
VAPA-201ENST00000340541 PRAMEF22A3QJZ6 481 aa20.27■□□□□ 0.84
VAPA-201ENST00000340541 STARD3NLO95772 234 aa20.27■□□□□ 0.84
VAPA-201ENST00000340541 ARHGAP27Q6ZUM4 889 aa20.27■□□□□ 0.84
VAPA-201ENST00000340541 TEX13AQ9BXU3 409 aaPredicted RBP20.27■□□□□ 0.84
VAPA-201ENST00000340541 SRP68Q9UHB9 627 aaKnown RBP20.27■□□□□ 0.84
VAPA-201ENST00000340541 TRIM35Q9UPQ4 493 aa20.27■□□□□ 0.84
VAPA-201ENST00000340541 ZNF526Q8TF50 670 aaPredicted RBP20.26■□□□□ 0.83
VAPA-201ENST00000340541 LMOD3Q0VAK6 560 aa20.25■□□□□ 0.83
VAPA-201ENST00000340541 NEUROD2Q15784 382 aa20.25■□□□□ 0.83
VAPA-201ENST00000340541 PNISRQ8TF01 805 aaKnown RBP20.25■□□□□ 0.83
VAPA-201ENST00000340541 USP16Q9Y5T5 823 aa20.25■□□□□ 0.83
VAPA-201ENST00000340541 COL15A1P39059 1388 aa20.24■□□□□ 0.83
VAPA-201ENST00000340541 POLRMTO00411 1230 aaKnown RBP20.24■□□□□ 0.83
VAPA-201ENST00000340541 KIF3CO14782 793 aa20.24■□□□□ 0.83
VAPA-201ENST00000340541 SNRPA1P09661 255 aaKnown RBP20.24■□□□□ 0.83
VAPA-201ENST00000340541 HSPA6P17066 643 aa20.24■□□□□ 0.83
VAPA-201ENST00000340541 CANXP27824 592 aaKnown RBP20.24■□□□□ 0.83
VAPA-201ENST00000340541 EIF5P55010 431 aaKnown RBP20.24■□□□□ 0.83
VAPA-201ENST00000340541 DDR1Q08345 913 aa20.24■□□□□ 0.83
VAPA-201ENST00000340541 NARFQ9UHQ1 456 aa20.24■□□□□ 0.83
VAPA-201ENST00000340541 BRCA1P38398 1863 aaKnown RBP20.24■□□□□ 0.83
VAPA-201ENST00000340541 LAMB4A4D0S4 1761 aa20.23■□□□□ 0.83
VAPA-201ENST00000340541 DALRD3Q5D0E6 543 aaKnown RBP20.23■□□□□ 0.83
VAPA-201ENST00000340541 USPL1Q5W0Q7 1092 aa20.23■□□□□ 0.83
VAPA-201ENST00000340541 MRS2Q9HD23 443 aa20.23■□□□□ 0.83
VAPA-201ENST00000340541 A1BGP04217 495 aa20.22■□□□□ 0.83
VAPA-201ENST00000340541 EIF4A1P60842 406 aaKnown RBP20.22■□□□□ 0.83
VAPA-201ENST00000340541 CEP350Q5VT06 3117 aa20.21■□□□□ 0.83
VAPA-201ENST00000340541 ARFGEF1Q9Y6D6 1849 aa20.21■□□□□ 0.83
VAPA-201ENST00000340541 APAF1O14727 1248 aa20.21■□□□□ 0.83
VAPA-201ENST00000340541 IL6STP40189 918 aaPredicted RBP20.2■□□□□ 0.82
VAPA-201ENST00000340541 BABAM1Q9NWV8 329 aa20.2■□□□□ 0.82
VAPA-201ENST00000340541 TOMM70O94826 608 aa20.19■□□□□ 0.82
VAPA-201ENST00000340541 BCL2L12Q9HB09 334 aa20.19■□□□□ 0.82
VAPA-201ENST00000340541 TSPYL4Q9UJ04 414 aa20.19■□□□□ 0.82
VAPA-201ENST00000340541 A0A087WZG4 1122 aa20.18■□□□□ 0.82
VAPA-201ENST00000340541 NBPF26B4DH59 902 aa20.18■□□□□ 0.82
VAPA-201ENST00000340541 NFIXQ14938 502 aa20.18■□□□□ 0.82
VAPA-201ENST00000340541 NBPF10Q6P3W6 841 aaKnown RBP20.18■□□□□ 0.82
VAPA-201ENST00000340541 NBPF15Q8N660 670 aa20.18■□□□□ 0.82
VAPA-201ENST00000340541 SCN7AQ01118 1682 aa20.18■□□□□ 0.82
VAPA-201ENST00000340541 CHL1O00533 1208 aa20.17■□□□□ 0.82
VAPA-201ENST00000340541 PIP4K2AP48426 406 aaPredicted RBP20.17■□□□□ 0.82
VAPA-201ENST00000340541 C9orf131Q5VYM1 1079 aa20.17■□□□□ 0.82
VAPA-201ENST00000340541 CHRNA5P30532 468 aa20.16■□□□□ 0.82
VAPA-201ENST00000340541 SERPINB2P05120 415 aa20.15■□□□□ 0.82
VAPA-201ENST00000340541 BCORQ6W2J9 1755 aa20.15■□□□□ 0.82
VAPA-201ENST00000340541 NRXN2Q9P2S2 1712 aa20.14■□□□□ 0.81
VAPA-201ENST00000340541 PDZRN3Q9UPQ7 1066 aa20.14■□□□□ 0.81
VAPA-201ENST00000340541 TBC1D2BQ9UPU7 963 aa20.14■□□□□ 0.81
VAPA-201ENST00000340541 ZNF330Q9Y3S2 320 aaPredicted RBP20.14■□□□□ 0.81
VAPA-201ENST00000340541 APLP1P51693 650 aa20.13■□□□□ 0.81
VAPA-201ENST00000340541 KDM2BQ8NHM5 1336 aa20.12■□□□□ 0.81
VAPA-201ENST00000340541 AFDNP55196 1824 aaKnown RBP20.12■□□□□ 0.81
VAPA-201ENST00000340541 CAMTA2O94983 1202 aa20.12■□□□□ 0.81
VAPA-201ENST00000340541 ZNF853P0CG23 659 aa20.12■□□□□ 0.81
VAPA-201ENST00000340541 CFAP44Q96MT7 982 aa20.12■□□□□ 0.81
VAPA-201ENST00000340541 ZC3H4Q9UPT8 1303 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms