RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PLCB4Q15147 1175 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 C20orf194Q5TEA3 1177 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 B4GALNT4Q76KP1 1039 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 TSC1Q92574 1164 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 SYNPO2Q9UMS6 1093 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 SRGAP3O43295 1099 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 CXorf38Q8TB03 319 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 C17orf50Q8WW18 174 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 H2AFXP16104 143 aaPredicted RBP4.83□□□□□ -1.64
NEDD4-201ENST00000338963 POLD1P28340 1107 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 RPS6KA3P51812 740 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 LSM14AQ8ND56 463 aaKnown RBP4.83□□□□□ -1.64
NEDD4-201ENST00000338963 ARFGAP3Q9NP61 516 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 MAP3K5Q99683 1374 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 DCTN1Q14203 1278 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 FBXO38Q6PIJ6 1188 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 CCHCR1Q8TD31 782 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 RTF1Q92541 710 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 MPHOSPH6Q99547 160 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 KIF3BO15066 747 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 AHCYL1O43865 530 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 LUC7L3O95232 432 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 INPP5BP32019 993 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 MFN1Q8IWA4 741 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 NUP133Q8WUM0 1156 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 SMARCE1Q969G3 411 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 RUFY1Q96T51 708 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 TRIM66O15016 1216 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 PSMC1P62191 440 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 GRIK3Q13003 919 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 AMOTQ4VCS5 1084 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 STK11IPQ8N1F8 1099 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 ACRBPQ8NEB7 543 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 MAGEC3Q8TD91 643 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 KCND1Q9NSA2 647 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 ODF2LQ9ULJ1 636 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 ATXN2Q99700 1313 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 WDR33Q9C0J8 1336 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 GOLGA6L4A6NEF3 574 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 EFCAB8A8MWE9 144 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 PDIA5Q14554 519 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC80Q76M96 950 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 GPR161Q8N6U8 529 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 KDRP35968 1356 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 GBP2P32456 591 aaPredicted RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 DRP2Q13474 957 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 SLC5A9Q2M3M2 681 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC92Q53HC0 331 aaPredicted RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 MORC1Q86VD1 984 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 AMOTL1Q8IY63 956 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 FAM71BQ8TC56 605 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 GPT2Q8TD30 523 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 MMTAG2Q9BU76 263 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 MOV10L1Q9BXT6 1211 aaKnown RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 DNAI1Q9UI46 699 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 NLRP1Q9C000 1473 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 ABCC8Q09428 1581 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 KCNJ6P48051 423 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 HDXQ7Z353 690 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 WDR66Q8TBY9 1149 aa4.82□□□□□ -1.64
NEDD4-201ENST00000338963 TTC12Q9H892 705 aaPredicted RBP4.82□□□□□ -1.64
NEDD4-201ENST00000338963 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.82□□□□□ -1.643e-7■■■■■ 29.4
NEDD4-201ENST00000338963 GOLGA6CA6NDK9 693 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 GOLGA6BA6NDN3 693 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 GOLGA6DP0CG33 693 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 SMC1AQ14683 1233 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 GPRASP1Q5JY77 1395 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 DRAXINQ8NBI3 349 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC150Q8NCX0 1101 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 FAM76AQ8TAV0 307 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 GOLGA6AQ9NYA3 693 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 LIN7AO14910 233 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 CREB3O43889 395 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 AKAP17AQ02040 695 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 G3BP1Q13283 466 aaKnown RBP eCLIP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 E2F4Q16254 413 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 NFXL1Q6ZNB6 911 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 LUC7LQ9NQ29 371 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 CEP104O60308 925 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 DESP17661 470 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 VCAM1P19320 739 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 MX1P20591 662 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 CASTP20810 708 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 MLECQ14165 292 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 PREPLQ4J6C6 727 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 LRRC23Q53EV4 343 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 OGFOD1Q8N543 542 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 ZNF215Q9UL58 517 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 FAN1Q9Y2M0 1017 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 SYNRGQ9UMZ2 1314 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 RBM6P78332 1123 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 SF3A1Q15459 793 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 TAF7Q15545 349 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 ELF2Q15723 593 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 BMP2KLQ5H9B9 411 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 HHATQ5VTY9 493 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 NAIF1Q69YI7 327 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 TRIM42Q8IWZ5 723 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 GTF3C6Q969F1 213 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 C16orf45Q96MC5 204 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms