RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 HEG1Q9ULI3 1381 aa23.61■■□□□ 1.37
TPM1-203ENST00000317516 CICQ96RK0 1608 aaPredicted RBP23.6■■□□□ 1.37
TPM1-203ENST00000317516 TM4SF1P30408 202 aa23.6■■□□□ 1.37
TPM1-203ENST00000317516 C10orf71Q711Q0 1435 aa23.59■■□□□ 1.37
TPM1-203ENST00000317516 COL15A1P39059 1388 aa23.59■■□□□ 1.37
TPM1-203ENST00000317516 TJP1Q07157 1748 aa23.59■■□□□ 1.37
TPM1-203ENST00000317516 DPEP1P16444 411 aa23.58■■□□□ 1.37
TPM1-203ENST00000317516 EIF5P55010 431 aaKnown RBP23.58■■□□□ 1.37
TPM1-203ENST00000317516 DDR1Q08345 913 aa23.58■■□□□ 1.37
TPM1-203ENST00000317516 RALBP1Q15311 655 aa23.58■■□□□ 1.37
TPM1-203ENST00000317516 MCM10Q7L590 875 aa23.58■■□□□ 1.37
TPM1-203ENST00000317516 BCS1LQ9Y276 419 aa23.58■■□□□ 1.37
TPM1-203ENST00000317516 PXDNLA1KZ92 1463 aa23.57■■□□□ 1.36
TPM1-203ENST00000317516 POLRMTO00411 1230 aaKnown RBP23.57■■□□□ 1.36
TPM1-203ENST00000317516 GOLGB1Q14789 3259 aaKnown RBP23.57■■□□□ 1.36
TPM1-203ENST00000317516 PIM2Q9P1W9 311 aa23.55■■□□□ 1.36
TPM1-203ENST00000317516 KCNQ3O43525 872 aa23.54■■□□□ 1.36
TPM1-203ENST00000317516 IL6STP40189 918 aaPredicted RBP23.54■■□□□ 1.36
TPM1-203ENST00000317516 DDX10Q13206 875 aaKnown RBP23.54■■□□□ 1.36
TPM1-203ENST00000317516 NFIXQ14938 502 aa23.54■■□□□ 1.36
TPM1-203ENST00000317516 C4AP0C0L4 1744 aa23.53■■□□□ 1.36
TPM1-203ENST00000317516 GIGYF1O75420 1035 aaPredicted RBP23.53■■□□□ 1.36
TPM1-203ENST00000317516 DCTN1Q14203 1278 aa23.53■■□□□ 1.36
TPM1-203ENST00000317516 TAF7Q15545 349 aaPredicted RBP23.53■■□□□ 1.36
TPM1-203ENST00000317516 ZNF330Q9Y3S2 320 aaPredicted RBP23.53■■□□□ 1.36
TPM1-203ENST00000317516 A1BGP04217 495 aa23.52■■□□□ 1.36
TPM1-203ENST00000317516 SNRPA1P09661 255 aaKnown RBP23.52■■□□□ 1.36
TPM1-203ENST00000317516 BCL2L12Q9HB09 334 aa23.52■■□□□ 1.36
TPM1-203ENST00000317516 SERPINB2P05120 415 aa23.51■■□□□ 1.35
TPM1-203ENST00000317516 KCNA3P22001 575 aa23.51■■□□□ 1.35
TPM1-203ENST00000317516 ARHGAP27Q6ZUM4 889 aa23.51■■□□□ 1.35
TPM1-203ENST00000317516 C1QTNF8P60827 252 aa23.5■■□□□ 1.35
TPM1-203ENST00000317516 DALRD3Q5D0E6 543 aaKnown RBP23.5■■□□□ 1.35
TPM1-203ENST00000317516 PNISRQ8TF01 805 aaKnown RBP23.5■■□□□ 1.35
TPM1-203ENST00000317516 PLEKHF1Q96S99 279 aa23.5■■□□□ 1.35
TPM1-203ENST00000317516 USP16Q9Y5T5 823 aa23.5■■□□□ 1.35
TPM1-203ENST00000317516 MAPK8IP3Q9UPT6 1336 aa23.5■■□□□ 1.35
TPM1-203ENST00000317516 GPBP1L1Q9HC44 474 aaPredicted RBP23.49■■□□□ 1.35
TPM1-203ENST00000317516 TBC1D2BQ9UPU7 963 aa23.49■■□□□ 1.35
TPM1-203ENST00000317516 UBR2Q8IWV8 1755 aa23.48■■□□□ 1.35
TPM1-203ENST00000317516 NFE2L2Q16236 605 aa23.48■■□□□ 1.35
TPM1-203ENST00000317516 BICDL1Q6ZP65 573 aa23.48■■□□□ 1.35
TPM1-203ENST00000317516 ATP10DQ9P241 1426 aa23.48■■□□□ 1.35
TPM1-203ENST00000317516 VIRMAQ69YN4 1812 aaKnown RBP23.47■■□□□ 1.35
TPM1-203ENST00000317516 KIF13BQ9NQT8 1826 aa23.47■■□□□ 1.35
TPM1-203ENST00000317516 CHRNA5P30532 468 aa23.46■■□□□ 1.35
TPM1-203ENST00000317516 DZIP3Q86Y13 1208 aaKnown RBP23.45■■□□□ 1.34
TPM1-203ENST00000317516 TBC1D9BQ66K14 1250 aa23.44■■□□□ 1.34
TPM1-203ENST00000317516 SETDB2Q96T68 719 aa23.44■■□□□ 1.34
TPM1-203ENST00000317516 ADCY9O60503 1353 aa23.43■■□□□ 1.34
TPM1-203ENST00000317516 MYBBP1AQ9BQG0 1328 aaKnown RBP23.43■■□□□ 1.34
TPM1-203ENST00000317516 PRAMEF22A3QJZ6 481 aa23.43■■□□□ 1.34
TPM1-203ENST00000317516 ZNF526Q8TF50 670 aaPredicted RBP23.43■■□□□ 1.34
TPM1-203ENST00000317516 MIS18AQ9NYP9 233 aa23.43■■□□□ 1.34
TPM1-203ENST00000317516 PDZRN3Q9UPQ7 1066 aa23.43■■□□□ 1.34
TPM1-203ENST00000317516 SIPA1L3O60292 1781 aaPredicted RBP23.42■■□□□ 1.34
TPM1-203ENST00000317516 H0YIN7 160 aa23.42■■□□□ 1.34
TPM1-203ENST00000317516 CAMTA2O94983 1202 aa23.42■■□□□ 1.34
TPM1-203ENST00000317516 NPHP1O15259 732 aa23.41■■□□□ 1.34
TPM1-203ENST00000317516 CLEC4GQ6UXB4 293 aa23.41■■□□□ 1.34
TPM1-203ENST00000317516 ZNF652Q9Y2D9 606 aa23.41■■□□□ 1.34
TPM1-203ENST00000317516 CARMIL3Q8ND23 1372 aa23.4■■□□□ 1.34
TPM1-203ENST00000317516 N4BP2Q86UW6 1770 aaPredicted RBP23.4■■□□□ 1.34
TPM1-203ENST00000317516 PDE6BP35913 854 aa23.4■■□□□ 1.34
TPM1-203ENST00000317516 C2CD5Q86YS7 1000 aa23.4■■□□□ 1.34
TPM1-203ENST00000317516 BRIP1Q9BX63 1249 aa23.4■■□□□ 1.34
TPM1-203ENST00000317516 PIP4K2AP48426 406 aaPredicted RBP23.39■■□□□ 1.33
TPM1-203ENST00000317516 RIPK4P57078 832 aa23.39■■□□□ 1.33
TPM1-203ENST00000317516 TTLL6Q8N841 843 aa23.39■■□□□ 1.33
TPM1-203ENST00000317516 RGL2O15211 777 aa23.38■■□□□ 1.33
TPM1-203ENST00000317516 LMOD3Q0VAK6 560 aa23.38■■□□□ 1.33
TPM1-203ENST00000317516 KIAA1551Q9HCM1 1747 aa23.38■■□□□ 1.33
TPM1-203ENST00000317516 THUMPD2Q9BTF0 503 aaKnown RBP23.37■■□□□ 1.33
TPM1-203ENST00000317516 SENP3-EIF4A1A0A087X0R7 540 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 NBPF26B4DH59 902 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 EIF4A1P60842 406 aaKnown RBP23.36■■□□□ 1.33
TPM1-203ENST00000317516 ST5P78524 1137 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 WDR43Q15061 677 aaKnown RBP eCLIP23.36■■□□□ 1.33
TPM1-203ENST00000317516 C9orf131Q5VYM1 1079 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 PRR5LQ6MZQ0 368 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 NBPF10Q6P3W6 841 aaKnown RBP23.36■■□□□ 1.33
TPM1-203ENST00000317516 NBPF15Q8N660 670 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 CNBD1Q8NA66 436 aa23.36■■□□□ 1.33
TPM1-203ENST00000317516 TMPOP42166 694 aaKnown RBP23.34■■□□□ 1.33
TPM1-203ENST00000317516 ZNF622Q969S3 477 aaKnown RBP eCLIP23.34■■□□□ 1.336e-7■■□□□ 13.8
TPM1-203ENST00000317516 NBPF5PQ86XG9 351 aaPredicted RBP23.33■■□□□ 1.33
TPM1-203ENST00000317516 BABAM1Q9NWV8 329 aa23.33■■□□□ 1.33
TPM1-203ENST00000317516 TSPYL4Q9UJ04 414 aa23.33■■□□□ 1.33
TPM1-203ENST00000317516 TPTE2Q6XPS3 522 aa23.32■■□□□ 1.32
TPM1-203ENST00000317516 RNF181Q9P0P0 153 aa23.32■■□□□ 1.32
TPM1-203ENST00000317516 ZEB1P37275 1124 aaPredicted RBP23.31■■□□□ 1.32
TPM1-203ENST00000317516 CCDC24Q8N4L8 307 aa23.31■■□□□ 1.32
TPM1-203ENST00000317516 NIP7Q9Y221 180 aaKnown RBP eCLIP23.31■■□□□ 1.32
TPM1-203ENST00000317516 RRP7AQ9Y3A4 280 aaKnown RBP23.31■■□□□ 1.32
TPM1-203ENST00000317516 NRXN2Q9P2S2 1712 aa23.3■■□□□ 1.32
TPM1-203ENST00000317516 NGEFQ8N5V2 710 aa23.3■■□□□ 1.32
TPM1-203ENST00000317516 RUNDC1Q96C34 613 aa23.3■■□□□ 1.32
TPM1-203ENST00000317516 PRKRIP1Q9H875 184 aaPredicted RBP23.3■■□□□ 1.32
TPM1-203ENST00000317516 CNKSR1Q969H4 720 aa23.29■■□□□ 1.32
TPM1-203ENST00000317516 ERVV-1B6SEH8 477 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms