RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 LMTK3Q96Q04 1460 aa15.34■□□□□ 0.05
RNF4-201ENST00000314289 SURF6O75683 361 aaKnown RBP15.33■□□□□ 0.05
RNF4-201ENST00000314289 ARXQ96QS3 562 aa15.33■□□□□ 0.05
RNF4-201ENST00000314289 SOS1Q07889 1333 aaPredicted RBP15.33■□□□□ 0.04
RNF4-201ENST00000314289 CD2BP2O95400 341 aaKnown RBP15.33■□□□□ 0.04
RNF4-201ENST00000314289 PDE1AP54750 535 aa15.33■□□□□ 0.04
RNF4-201ENST00000314289 NUTM1Q86Y26 1132 aa15.33■□□□□ 0.04
RNF4-201ENST00000314289 XIRP1Q702N8 1843 aaKnown RBP15.33■□□□□ 0.04
RNF4-201ENST00000314289 IFNL2Q8IZJ0 200 aa15.32■□□□□ 0.04
RNF4-201ENST00000314289 CACNA1FO60840 1977 aa15.32■□□□□ 0.04
RNF4-201ENST00000314289 HOXB7P09629 217 aa15.32■□□□□ 0.04
RNF4-201ENST00000314289 JARID2Q92833 1246 aaPredicted RBP15.32■□□□□ 0.04
RNF4-201ENST00000314289 KIF2CQ99661 725 aa15.32■□□□□ 0.04
RNF4-201ENST00000314289 USP16Q9Y5T5 823 aa15.32■□□□□ 0.04
RNF4-201ENST00000314289 RBM25P49756 843 aaKnown RBP15.32■□□□□ 0.04
RNF4-201ENST00000314289 MAP4K4O95819 1239 aaPredicted RBP15.31■□□□□ 0.04
RNF4-201ENST00000314289 C9orf78Q9NZ63 289 aaPredicted RBP15.31■□□□□ 0.04
RNF4-201ENST00000314289 DDX54Q8TDD1 881 aaKnown RBP15.31■□□□□ 0.04
RNF4-201ENST00000314289 RILPL2Q969X0 211 aa15.31■□□□□ 0.04
RNF4-201ENST00000314289 STRCQ7RTU9 1775 aa15.31■□□□□ 0.04
RNF4-201ENST00000314289 HSCBQ8IWL3 235 aa15.3■□□□□ 0.04
RNF4-201ENST00000314289 TRIM6-TRIM34B2RNG4 842 aa15.3■□□□□ 0.04
RNF4-201ENST00000314289 PDIA6Q15084 440 aa15.3■□□□□ 0.04
RNF4-201ENST00000314289 ANTXR1Q9H6X2 564 aa15.3■□□□□ 0.04
RNF4-201ENST00000314289 MX1P20591 662 aa15.29■□□□□ 0.04
RNF4-201ENST00000314289 KSR2Q6VAB6 950 aa15.29■□□□□ 0.04
RNF4-201ENST00000314289 TTC5Q8N0Z6 440 aa15.29■□□□□ 0.04
RNF4-201ENST00000314289 PA2G4Q9UQ80 394 aaKnown RBP15.29■□□□□ 0.04
RNF4-201ENST00000314289 COL18A1P39060 1754 aa15.29■□□□□ 0.04
RNF4-201ENST00000314289 IBTKQ9P2D0 1353 aaPredicted RBP15.29■□□□□ 0.04
RNF4-201ENST00000314289 CABP4P57796 275 aa15.29■□□□□ 0.04
RNF4-201ENST00000314289 UNC5CLQ8IV45 518 aa15.29■□□□□ 0.04
RNF4-201ENST00000314289 NCOA3Q9Y6Q9 1424 aa15.28■□□□□ 0.04
RNF4-201ENST00000314289 RIC3Q7Z5B4 369 aa15.28■□□□□ 0.04
RNF4-201ENST00000314289 LARP1Q6PKG0 1096 aaKnown RBP15.28■□□□□ 0.04
RNF4-201ENST00000314289 COPS6Q7L5N1 327 aa15.28■□□□□ 0.04
RNF4-201ENST00000314289 SSH3Q8TE77 659 aa15.28■□□□□ 0.04
RNF4-201ENST00000314289 XAGE3Q8WTP9 111 aa15.28■□□□□ 0.04
RNF4-201ENST00000314289 HEG1Q9ULI3 1381 aa15.28■□□□□ 0.04
RNF4-201ENST00000314289 OS9Q13438 667 aaPredicted RBP15.28■□□□□ 0.04
RNF4-201ENST00000314289 DDX21Q9NR30 783 aaKnown RBP eCLIP15.28■□□□□ 0.04
RNF4-201ENST00000314289 CAMTA1Q9Y6Y1 1673 aa15.27■□□□□ 0.04
RNF4-201ENST00000314289 DCAF5Q96JK2 942 aa15.27■□□□□ 0.04
RNF4-201ENST00000314289 EVA1CP58658 441 aa15.27■□□□□ 0.03
RNF4-201ENST00000314289 HYPKQ9NX55 129 aa15.27■□□□□ 0.03
RNF4-201ENST00000314289 PTCD1O75127 700 aaKnown RBP15.26■□□□□ 0.03
RNF4-201ENST00000314289 FAM43AQ8N2R8 423 aa15.26■□□□□ 0.03
RNF4-201ENST00000314289 RHPN1Q8TCX5 695 aa15.26■□□□□ 0.03
RNF4-201ENST00000314289 PXDNLA1KZ92 1463 aa15.26■□□□□ 0.03
RNF4-201ENST00000314289 SOS2Q07890 1332 aaPredicted RBP15.26■□□□□ 0.03
RNF4-201ENST00000314289 HSP90AB1P08238 724 aaKnown RBP15.25■□□□□ 0.03
RNF4-201ENST00000314289 KAT6BQ8WYB5 2073 aa15.25■□□□□ 0.03
RNF4-201ENST00000314289 KLHDC4Q8TBB5 520 aa15.25■□□□□ 0.03
RNF4-201ENST00000314289 USP26Q9BXU7 913 aa15.25■□□□□ 0.03
RNF4-201ENST00000314289 WDR17Q8IZU2 1322 aa15.25■□□□□ 0.03
RNF4-201ENST00000314289 ZCRB1Q8TBF4 217 aaKnown RBP15.25■□□□□ 0.03
RNF4-201ENST00000314289 MYD88Q99836 296 aa15.25■□□□□ 0.03
RNF4-201ENST00000314289 SALL3Q9BXA9 1300 aa15.25■□□□□ 0.03
RNF4-201ENST00000314289 ATP5J2-PTCD1G3V325 749 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 IGKV5-2P06315 115 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 HSP90AA1P07900 732 aaKnown RBP15.24■□□□□ 0.03
RNF4-201ENST00000314289 POLA2Q14181 598 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 CASC1Q6TDU7 716 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 SUCLG2Q96I99 432 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 SIL1Q9H173 461 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.24■□□□□ 0.035e-8■□□□□ 9.7
RNF4-201ENST00000314289 CHMP4AQ9BY43 222 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 CPDO75976 1380 aa15.24■□□□□ 0.03
RNF4-201ENST00000314289 CRYBG1Q9Y4K1 1723 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 OSBPL3Q9H4L5 887 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 SIPA1L3O60292 1781 aaPredicted RBP15.23■□□□□ 0.03
RNF4-201ENST00000314289 DDX58O95786 925 aaKnown RBP15.23■□□□□ 0.03
RNF4-201ENST00000314289 SNRPA1P09661 255 aaKnown RBP15.23■□□□□ 0.03
RNF4-201ENST00000314289 KAZALD1Q96I82 304 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 BICC1Q9H694 974 aaKnown RBP15.23■□□□□ 0.03
RNF4-201ENST00000314289 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.23■□□□□ 0.03
RNF4-201ENST00000314289 OVOS2A0A0G2JMS6 1433 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 GRM8O00222 908 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 FMNL2Q96PY5 1086 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 SCN11AQ9UI33 1791 aa15.23■□□□□ 0.03
RNF4-201ENST00000314289 LINS1Q8NG48 757 aa15.22■□□□□ 0.03
RNF4-201ENST00000314289 IL25Q9H293 177 aa15.22■□□□□ 0.03
RNF4-201ENST00000314289 C5P01031 1676 aa15.22■□□□□ 0.03
RNF4-201ENST00000314289 ZNF330Q9Y3S2 320 aaPredicted RBP15.22■□□□□ 0.03
RNF4-201ENST00000314289 ERC2O15083 957 aa15.21■□□□□ 0.03
RNF4-201ENST00000314289 ALDH1L1O75891 902 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 IL2RBP14784 551 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 ANKRD13DQ6ZTN6 518 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 BTG4Q9NY30 223 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 A1BGP04217 495 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 EPHA10Q5JZY3 1008 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 KIF1BPQ96EK5 621 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 ANO2Q9NQ90 1003 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 COL5A2P05997 1499 aaPredicted RBP15.2■□□□□ 0.02
RNF4-201ENST00000314289 NEXNQ0ZGT2 675 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 UBE2Q2Q8WVN8 375 aa15.2■□□□□ 0.02
RNF4-201ENST00000314289 NEURL1BA8MQ27 555 aa15.19■□□□□ 0.02
RNF4-201ENST00000314289 SNX21Q969T3 373 aa15.19■□□□□ 0.02
RNF4-201ENST00000314289 GZF1Q9H116 711 aaPredicted RBP15.19■□□□□ 0.02
RNF4-201ENST00000314289 CHMLP26374 656 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms