RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 MAP7D2Q96T17 732 aa20.19■□□□□ 0.82
SHANK1-201ENST00000293441 DMRT2Q9Y5R5 561 aa20.19■□□□□ 0.82
SHANK1-201ENST00000293441 NKTRP30414 1462 aaKnown RBP20.19■□□□□ 0.82
SHANK1-201ENST00000293441 SMTNL1A8MU46 457 aa20.19■□□□□ 0.82
SHANK1-201ENST00000293441 UBA5Q9GZZ9 404 aa20.19■□□□□ 0.82
SHANK1-201ENST00000293441 GOLGA6L10A6NI86 522 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 CCDC196A0A1B0GTZ2 297 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 H0YHG0 523 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 PPP4R3AQ6IN85 833 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 CWC25Q9NXE8 425 aaPredicted RBP20.18■□□□□ 0.82
SHANK1-201ENST00000293441 DDX46Q7L014 1031 aaKnown RBP20.18■□□□□ 0.82
SHANK1-201ENST00000293441 ACEP12821 1306 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 TTC21BQ7Z4L5 1316 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 KIAA1328Q86T90 577 aa20.18■□□□□ 0.82
SHANK1-201ENST00000293441 FLIIQ13045 1269 aa20.17■□□□□ 0.82
SHANK1-201ENST00000293441 JARID2Q92833 1246 aaPredicted RBP20.17■□□□□ 0.82
SHANK1-201ENST00000293441 IFIT3O14879 490 aaKnown RBP20.17■□□□□ 0.82
SHANK1-201ENST00000293441 C8orf76Q96K31 380 aa20.17■□□□□ 0.82
SHANK1-201ENST00000293441 CDC5LQ99459 802 aaKnown RBP20.17■□□□□ 0.82
SHANK1-201ENST00000293441 PPP1R12BO60237 982 aaPredicted RBP20.16■□□□□ 0.82
SHANK1-201ENST00000293441 TRIM21P19474 475 aaKnown RBP20.16■□□□□ 0.82
SHANK1-201ENST00000293441 SSRP1Q08945 709 aaKnown RBP20.16■□□□□ 0.82
SHANK1-201ENST00000293441 FILIP1Q7Z7B0 1213 aa20.16■□□□□ 0.82
SHANK1-201ENST00000293441 LDHAL6AQ6ZMR3 332 aa20.16■□□□□ 0.82
SHANK1-201ENST00000293441 TEX13AQ9BXU3 409 aaPredicted RBP20.16■□□□□ 0.82
SHANK1-201ENST00000293441 CENPHQ9H3R5 247 aa20.16■□□□□ 0.82
SHANK1-201ENST00000293441 PTPRCP08575 1304 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 GOLIM4O00461 696 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 C20orf194Q5TEA3 1177 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 KLHL10Q6JEL2 608 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 PPP1R42Q7Z4L9 355 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 FAM83GA6ND36 823 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 NLRP5P59047 1200 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 MAP3K11Q16584 847 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 CFAP100Q494V2 611 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 NCOA1Q15788 1441 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 RNF41Q9H4P4 317 aaPredicted RBP20.15■□□□□ 0.82
SHANK1-201ENST00000293441 GOLGA8AA7E2F4 631 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 GOLGA8BA8MQT2 603 aa20.15■□□□□ 0.82
SHANK1-201ENST00000293441 ZNF397Q8NF99 534 aaPredicted RBP20.14■□□□□ 0.82
SHANK1-201ENST00000293441 ACSBG1Q96GR2 724 aa20.14■□□□□ 0.82
SHANK1-201ENST00000293441 GRPEL1Q9HAV7 217 aa20.14■□□□□ 0.82
SHANK1-201ENST00000293441 EPB41L2O43491 1005 aaKnown RBP20.14■□□□□ 0.81
SHANK1-201ENST00000293441 CCT2P78371 535 aaKnown RBP20.14■□□□□ 0.81
SHANK1-201ENST00000293441 SNRKQ9NRH2 765 aa20.14■□□□□ 0.81
SHANK1-201ENST00000293441 HMGB1P09429 215 aaKnown RBP20.14■□□□□ 0.81
SHANK1-201ENST00000293441 ENOX2Q16206 610 aaKnown RBP20.14■□□□□ 0.81
SHANK1-201ENST00000293441 CATIPQ7Z7H3 387 aa20.14■□□□□ 0.81
SHANK1-201ENST00000293441 CCDC144CPQ8IYA2 1237 aa20.14■□□□□ 0.81
SHANK1-201ENST00000293441 LARP6Q9BRS8 491 aaKnown RBP20.14■□□□□ 0.81
SHANK1-201ENST00000293441 CADPS2Q86UW7 1296 aa20.14■□□□□ 0.81
SHANK1-201ENST00000293441 SCAF11Q99590 1463 aaKnown RBP20.14■□□□□ 0.81
SHANK1-201ENST00000293441 ST5P78524 1137 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 ANKRD18AQ8IVF6 992 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 FEZ1Q99689 392 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 C11orf95C9JLR9 678 aaPredicted RBP20.13■□□□□ 0.81
SHANK1-201ENST00000293441 TSG101Q99816 390 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 POTEJP0CG39 1038 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 MSH6P52701 1360 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 UBE3BQ7Z3V4 1068 aa20.13■□□□□ 0.81
SHANK1-201ENST00000293441 CCDC191Q8NCU4 936 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 VAT1LQ9HCJ6 419 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 TSPYL1Q9H0U9 437 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 LIG1P18858 919 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 FAM193AP78312 1265 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 ZRSR2Q15696 482 aaKnown RBP20.12■□□□□ 0.81
SHANK1-201ENST00000293441 TMEM266Q2M3C6 531 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 TNRQ92752 1358 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 CIZ1Q9ULV3 898 aaPredicted RBP20.12■□□□□ 0.81
SHANK1-201ENST00000293441 TAX1BP1Q86VP1 789 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 DNAJC5BQ9UF47 199 aa20.12■□□□□ 0.81
SHANK1-201ENST00000293441 PDIA4P13667 645 aaKnown RBP20.11■□□□□ 0.81
SHANK1-201ENST00000293441 TTF1Q15361 905 aaPredicted RBP20.11■□□□□ 0.81
SHANK1-201ENST00000293441 TRMT1LQ7Z2T5 733 aaKnown RBP20.11■□□□□ 0.81
SHANK1-201ENST00000293441 EHMT1Q9H9B1 1298 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 FBLN1P23142 703 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 CCDC112Q8NEF3 446 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 SYCE3A1L190 88 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 TAF4BQ92750 862 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 EVI5LQ96CN4 794 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 CWC15Q9P013 229 aaKnown RBP20.11■□□□□ 0.81
SHANK1-201ENST00000293441 ANXA1P04083 346 aa20.11■□□□□ 0.81
SHANK1-201ENST00000293441 CCDC194A0A1B0GVG4 234 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 PI4KAP2A4QPH2 592 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 SNRPA1P09661 255 aaKnown RBP20.1■□□□□ 0.81
SHANK1-201ENST00000293441 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 JAKMIP3Q5VZ66 844 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 NBPF5PQ86XG9 351 aaPredicted RBP20.1■□□□□ 0.81
SHANK1-201ENST00000293441 PI4KAP1Q8N8J0 262 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 BRPF3Q9ULD4 1205 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 RAB34Q9BZG1 259 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 C14orf93Q9H972 538 aaKnown RBP20.1■□□□□ 0.81
SHANK1-201ENST00000293441 TRIM27P14373 513 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 MBIPQ9NS73 344 aa20.1■□□□□ 0.81
SHANK1-201ENST00000293441 SKAP1Q86WV1 359 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 PHAXQ9H814 394 aaKnown RBP20.09■□□□□ 0.81
SHANK1-201ENST00000293441 SH2B1Q9NRF2 756 aaPredicted RBP20.09■□□□□ 0.81
SHANK1-201ENST00000293441 BAG3O95817 575 aa20.09■□□□□ 0.81
SHANK1-201ENST00000293441 MCM4P33991 863 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms