RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 SEPT11Q9NVA2 429 aaKnown RBP19.16■□□□□ 0.66
SH3RF1-201ENST00000284637 LRP2BPQ9P2M1 347 aa19.16■□□□□ 0.66
SH3RF1-201ENST00000284637 CCDC82Q8N4S0 544 aa19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 IPO4Q8TEX9 1081 aaKnown RBP19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 SHTN1A0MZ66 631 aa19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 CCT2P78371 535 aaKnown RBP19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 ENOX2Q16206 610 aaKnown RBP19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 PLCD3Q8N3E9 789 aa19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 ZNF830Q96NB3 372 aaPredicted RBP19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 CASQ1P31415 396 aa19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 FSIP1Q8NA03 581 aa19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 DDX19AQ9NUU7 478 aaKnown RBP19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 EPRSP07814 1512 aaKnown RBP19.15■□□□□ 0.66
SH3RF1-201ENST00000284637 KIF5CO60282 957 aa19.14■□□□□ 0.66
SH3RF1-201ENST00000284637 CPLX3Q8WVH0 158 aa19.14■□□□□ 0.66
SH3RF1-201ENST00000284637 ZNF165P49910 485 aa19.14■□□□□ 0.65
SH3RF1-201ENST00000284637 CTR9Q6PD62 1173 aa19.14■□□□□ 0.65
SH3RF1-201ENST00000284637 BMP2KQ9NSY1 1161 aaPredicted RBP19.14■□□□□ 0.65
SH3RF1-201ENST00000284637 RBM25P49756 843 aaKnown RBP19.14■□□□□ 0.65
SH3RF1-201ENST00000284637 PPFIA3O75145 1194 aa19.13■□□□□ 0.65
SH3RF1-201ENST00000284637 ABCF2Q9UG63 623 aa19.13■□□□□ 0.65
SH3RF1-201ENST00000284637 TTC22Q5TAA0 569 aa19.13■□□□□ 0.65
SH3RF1-201ENST00000284637 OGFRQ9NZT2 677 aa19.13■□□□□ 0.65
SH3RF1-201ENST00000284637 CEP131Q9UPN4 1083 aa19.13■□□□□ 0.65
SH3RF1-201ENST00000284637 GIMAP6Q6P9H5 292 aa19.13■□□□□ 0.65
SH3RF1-201ENST00000284637 TAF4BQ92750 862 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 CTAGE5O15320 804 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 SEPT7Q16181 437 aaKnown RBP19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 TMEM132AQ24JP5 1023 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 TMC6Q7Z403 805 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 ANKRD62A6NC57 917 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 IFIT1P09914 478 aaKnown RBP19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 JAKMIP3Q5VZ66 844 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 ABCC5O15440 1437 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 USHBP1Q8N6Y0 703 aa19.12■□□□□ 0.65
SH3RF1-201ENST00000284637 TMX3Q96JJ7 454 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 ADGRF5Q8IZF2 1346 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 METTL24Q5JXM2 366 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 IGSF3O75054 1194 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 LMAN1P49257 510 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 MYD88Q99836 296 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 ZC3H6P61129 1189 aaKnown RBP19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 UBE2HP62256 183 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 FLIIQ13045 1269 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 DNAAF4Q8WXU2 420 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 DISP3Q9P2K9 1392 aa19.11■□□□□ 0.65
SH3RF1-201ENST00000284637 DHX29Q7Z478 1369 aaKnown RBP19.1■□□□□ 0.65
SH3RF1-201ENST00000284637 CEP135Q66GS9 1140 aa19.1■□□□□ 0.65
SH3RF1-201ENST00000284637 LARP1Q6PKG0 1096 aaKnown RBP19.1■□□□□ 0.65
SH3RF1-201ENST00000284637 CNKSR2Q8WXI2 1034 aa19.1■□□□□ 0.65
SH3RF1-201ENST00000284637 NESP48681 1621 aa19.1■□□□□ 0.65
SH3RF1-201ENST00000284637 NUCB1Q02818 461 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 FAM83GA6ND36 823 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 MINDY4BA8MYZ0 360 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 SPA17Q15506 151 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 CNNM3Q8NE01 707 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 ZNF397Q8NF99 534 aaPredicted RBP19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 PCF11O94913 1555 aaKnown RBP19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 ISM2Q6H9L7 571 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 MBIPQ9NS73 344 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 MAP3K1Q13233 1512 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 ECHDC1Q9NTX5 307 aa19.09■□□□□ 0.65
SH3RF1-201ENST00000284637 HMGB1P09429 215 aaKnown RBP19.08■□□□□ 0.65
SH3RF1-201ENST00000284637 DNA2P51530 1060 aa19.08■□□□□ 0.65
SH3RF1-201ENST00000284637 MNAT1P51948 309 aa19.08■□□□□ 0.65
SH3RF1-201ENST00000284637 HDAC1Q13547 482 aaPredicted RBP19.08■□□□□ 0.65
SH3RF1-201ENST00000284637 PTCD1O75127 700 aaKnown RBP19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 THEMISQ8N1K5 641 aaPredicted RBP19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 SDSP20132 328 aa19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 IBSPP21815 317 aaPredicted RBP19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 STX1AQ16623 288 aa19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 RPRD2Q5VT52 1461 aaKnown RBP19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 GSDMDP57764 484 aa19.08■□□□□ 0.64
SH3RF1-201ENST00000284637 GOLGA8BA8MQT2 603 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 IVLP07476 585 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 MEX3CQ5U5Q3 659 aaKnown RBP19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 USP5P45974 858 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 SNW1Q13573 536 aaKnown RBP19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 SNX21Q969T3 373 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 PTPRCP08575 1304 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 ARHGEF11O15085 1522 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 MAP9Q49MG5 647 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 NAPBQ9H115 298 aa19.07■□□□□ 0.64
SH3RF1-201ENST00000284637 CCDC171Q6TFL3 1326 aa19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 EVI5LQ96CN4 794 aa19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 NUP88Q99567 741 aaPredicted RBP19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 POLR3DP05423 398 aaPredicted RBP19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 PRIM1P49642 420 aaKnown RBP19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 PTPN23Q9H3S7 1636 aa19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 NECAB1Q8N987 351 aa19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 ZSWIM4Q9H7M6 989 aa19.06■□□□□ 0.64
SH3RF1-201ENST00000284637 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 MPRIPQ6WCQ1 1025 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 KLHL34Q8N239 644 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 PRDM11Q9NQV5 511 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 AKAP2Q9Y2D5 859 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 ZNF213O14771 459 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 PPP1R42Q7Z4L9 355 aa19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 TTC12Q9H892 705 aaPredicted RBP19.05■□□□□ 0.64
SH3RF1-201ENST00000284637 CNPY2Q9Y2B0 182 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms