RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 GRIN3BO60391 1043 aa19.22■□□□□ 0.67
HMGN3-201ENST00000275036 USPL1Q5W0Q7 1092 aa19.22■□□□□ 0.67
HMGN3-201ENST00000275036 MCM10Q7L590 875 aa19.22■□□□□ 0.67
HMGN3-201ENST00000275036 TTC5Q8N0Z6 440 aa19.22■□□□□ 0.67
HMGN3-201ENST00000275036 PLEKHF1Q96S99 279 aa19.22■□□□□ 0.67
HMGN3-201ENST00000275036 BRCA1P38398 1863 aaKnown RBP19.22■□□□□ 0.67
HMGN3-201ENST00000275036 DCTN1Q14203 1278 aa19.21■□□□□ 0.67
HMGN3-201ENST00000275036 BCL2L12Q9HB09 334 aa19.21■□□□□ 0.67
HMGN3-201ENST00000275036 PARP3Q9Y6F1 533 aa19.2■□□□□ 0.66
HMGN3-201ENST00000275036 A0A0G2JLW4 131 aa19.19■□□□□ 0.66
HMGN3-201ENST00000275036 POLRMTO00411 1230 aaKnown RBP19.19■□□□□ 0.66
HMGN3-201ENST00000275036 CANXP27824 592 aaKnown RBP19.19■□□□□ 0.66
HMGN3-201ENST00000275036 TM4SF1P30408 202 aa19.19■□□□□ 0.66
HMGN3-201ENST00000275036 MYBBP1AQ9BQG0 1328 aaKnown RBP19.19■□□□□ 0.66
HMGN3-201ENST00000275036 AFDNP55196 1824 aaKnown RBP19.18■□□□□ 0.66
HMGN3-201ENST00000275036 SCN7AQ01118 1682 aa19.18■□□□□ 0.66
HMGN3-201ENST00000275036 NRXN2Q9P2S2 1712 aa19.18■□□□□ 0.66
HMGN3-201ENST00000275036 BTBD11A6QL63 1104 aa19.18■□□□□ 0.66
HMGN3-201ENST00000275036 ZEB1P37275 1124 aaPredicted RBP19.18■□□□□ 0.66
HMGN3-201ENST00000275036 NARFQ9UHQ1 456 aa19.18■□□□□ 0.66
HMGN3-201ENST00000275036 PRAMEF22A3QJZ6 481 aa19.17■□□□□ 0.66
HMGN3-201ENST00000275036 DPEP1P16444 411 aa19.17■□□□□ 0.66
HMGN3-201ENST00000275036 KCNA3P22001 575 aa19.17■□□□□ 0.66
HMGN3-201ENST00000275036 EIF5P55010 431 aaKnown RBP19.17■□□□□ 0.66
HMGN3-201ENST00000275036 TGFB2P61812 414 aa19.17■□□□□ 0.66
HMGN3-201ENST00000275036 RTF1Q92541 710 aaKnown RBP19.17■□□□□ 0.66
HMGN3-201ENST00000275036 HTATSF1O43719 755 aaKnown RBP19.16■□□□□ 0.66
HMGN3-201ENST00000275036 ZPR1O75312 459 aa19.16■□□□□ 0.66
HMGN3-201ENST00000275036 FMNL2Q96PY5 1086 aa19.16■□□□□ 0.66
HMGN3-201ENST00000275036 ADCY9O60503 1353 aa19.16■□□□□ 0.66
HMGN3-201ENST00000275036 KDM3BQ7LBC6 1761 aa19.15■□□□□ 0.66
HMGN3-201ENST00000275036 STARD3NLO95772 234 aa19.15■□□□□ 0.66
HMGN3-201ENST00000275036 NFIXQ14938 502 aa19.15■□□□□ 0.66
HMGN3-201ENST00000275036 A1BGP04217 495 aa19.14■□□□□ 0.65
HMGN3-201ENST00000275036 PRKRIP1Q9H875 184 aaPredicted RBP19.14■□□□□ 0.65
HMGN3-201ENST00000275036 ATP10DQ9P241 1426 aa19.14■□□□□ 0.65
HMGN3-201ENST00000275036 NFE2L2Q16236 605 aa19.13■□□□□ 0.65
HMGN3-201ENST00000275036 USP16Q9Y5T5 823 aa19.13■□□□□ 0.65
HMGN3-201ENST00000275036 BCORQ6W2J9 1755 aa19.13■□□□□ 0.65
HMGN3-201ENST00000275036 CARMIL3Q8ND23 1372 aa19.12■□□□□ 0.65
HMGN3-201ENST00000275036 NEFMP07197 916 aa19.12■□□□□ 0.65
HMGN3-201ENST00000275036 PIP4K2AP48426 406 aaPredicted RBP19.12■□□□□ 0.65
HMGN3-201ENST00000275036 TEX13AQ9BXU3 409 aaPredicted RBP19.12■□□□□ 0.65
HMGN3-201ENST00000275036 BCS1LQ9Y276 419 aa19.12■□□□□ 0.65
HMGN3-201ENST00000275036 ARFGEF1Q9Y6D6 1849 aa19.11■□□□□ 0.65
HMGN3-201ENST00000275036 CHRNA5P30532 468 aa19.11■□□□□ 0.65
HMGN3-201ENST00000275036 THUMPD2Q9BTF0 503 aaKnown RBP19.11■□□□□ 0.65
HMGN3-201ENST00000275036 MIS18AQ9NYP9 233 aa19.11■□□□□ 0.65
HMGN3-201ENST00000275036 MAPK8IP3Q9UPT6 1336 aa19.1■□□□□ 0.65
HMGN3-201ENST00000275036 IL6STP40189 918 aaPredicted RBP19.1■□□□□ 0.65
HMGN3-201ENST00000275036 TAF7Q15545 349 aaPredicted RBP19.1■□□□□ 0.65
HMGN3-201ENST00000275036 PNNQ9H307 717 aaKnown RBP19.1■□□□□ 0.65
HMGN3-201ENST00000275036 TBC1D2BQ9UPU7 963 aa19.1■□□□□ 0.65
HMGN3-201ENST00000275036 ZNF330Q9Y3S2 320 aaPredicted RBP19.1■□□□□ 0.65
HMGN3-201ENST00000275036 LAMB4A4D0S4 1761 aa19.09■□□□□ 0.65
HMGN3-201ENST00000275036 DLEC1Q9Y238 1755 aa19.09■□□□□ 0.65
HMGN3-201ENST00000275036 TBC1D9BQ66K14 1250 aa19.09■□□□□ 0.65
HMGN3-201ENST00000275036 ANKRD31Q8N7Z5 1873 aa19.09■□□□□ 0.65
HMGN3-201ENST00000275036 SERPINB2P05120 415 aa19.08■□□□□ 0.64
HMGN3-201ENST00000275036 BICDL1Q6ZP65 573 aa19.08■□□□□ 0.64
HMGN3-201ENST00000275036 A0A087WZG4 1122 aa19.07■□□□□ 0.64
HMGN3-201ENST00000275036 NBPF26B4DH59 902 aa19.07■□□□□ 0.64
HMGN3-201ENST00000275036 CAMTA2O94983 1202 aa19.07■□□□□ 0.64
HMGN3-201ENST00000275036 NBPF10Q6P3W6 841 aaKnown RBP19.07■□□□□ 0.64
HMGN3-201ENST00000275036 CCDC146Q8IYE0 955 aa19.07■□□□□ 0.64
HMGN3-201ENST00000275036 NBPF15Q8N660 670 aa19.07■□□□□ 0.64
HMGN3-201ENST00000275036 SNRPA1P09661 255 aaKnown RBP19.06■□□□□ 0.64
HMGN3-201ENST00000275036 PIM2Q9P1W9 311 aa19.06■□□□□ 0.64
HMGN3-201ENST00000275036 COL11A2P13942 1736 aaPredicted RBP19.05■□□□□ 0.64
HMGN3-201ENST00000275036 TMPOP42166 694 aaKnown RBP19.05■□□□□ 0.64
HMGN3-201ENST00000275036 RIPK4P57078 832 aa19.05■□□□□ 0.64
HMGN3-201ENST00000275036 ADAMTS8Q9UP79 889 aa19.05■□□□□ 0.64
HMGN3-201ENST00000275036 RRP7AQ9Y3A4 280 aaKnown RBP19.04■□□□□ 0.64
HMGN3-201ENST00000275036 GIGYF1O75420 1035 aaPredicted RBP19.03■□□□□ 0.64
HMGN3-201ENST00000275036 C1QTNF8P60827 252 aa19.03■□□□□ 0.64
HMGN3-201ENST00000275036 WDR43Q15061 677 aaKnown RBP eCLIP19.03■□□□□ 0.64
HMGN3-201ENST00000275036 DALRD3Q5D0E6 543 aaKnown RBP19.03■□□□□ 0.64
HMGN3-201ENST00000275036 ARHGAP27Q6ZUM4 889 aa19.03■□□□□ 0.64
HMGN3-201ENST00000275036 DZIP3Q86Y13 1208 aaKnown RBP19.03■□□□□ 0.64
HMGN3-201ENST00000275036 CCDC24Q8N4L8 307 aa19.03■□□□□ 0.64
HMGN3-201ENST00000275036 ZNF526Q8TF50 670 aaPredicted RBP19.03■□□□□ 0.64
HMGN3-201ENST00000275036 ZNF316A6NFI3 1004 aaPredicted RBP19.02■□□□□ 0.64
HMGN3-201ENST00000275036 EIF4A1P60842 406 aaKnown RBP19.02■□□□□ 0.64
HMGN3-201ENST00000275036 PRR5LQ6MZQ0 368 aa19.02■□□□□ 0.64
HMGN3-201ENST00000275036 PNISRQ8TF01 805 aaKnown RBP19.02■□□□□ 0.64
HMGN3-201ENST00000275036 RUNDC1Q96C34 613 aa19.01■□□□□ 0.63
HMGN3-201ENST00000275036 NEUROD2Q15784 382 aa19■□□□□ 0.63
HMGN3-201ENST00000275036 CCDC184Q52MB2 194 aa18.99■□□□□ 0.63
HMGN3-201ENST00000275036 C2CD5Q86YS7 1000 aa18.99■□□□□ 0.63
HMGN3-201ENST00000275036 GPBP1L1Q9HC44 474 aaPredicted RBP18.99■□□□□ 0.63
HMGN3-201ENST00000275036 TRIM35Q9UPQ4 493 aa18.99■□□□□ 0.63
HMGN3-201ENST00000275036 SBF1O95248 1867 aa18.98■□□□□ 0.63
HMGN3-201ENST00000275036 PRELPP51888 382 aa18.97■□□□□ 0.63
HMGN3-201ENST00000275036 SETDB2Q96T68 719 aa18.97■□□□□ 0.63
HMGN3-201ENST00000275036 TSPYL4Q9UJ04 414 aa18.97■□□□□ 0.63
HMGN3-201ENST00000275036 NUP98P52948 1817 aa18.96■□□□□ 0.63
HMGN3-201ENST00000275036 RASSF7Q02833 373 aa18.96■□□□□ 0.63
HMGN3-201ENST00000275036 LMOD3Q0VAK6 560 aa18.96■□□□□ 0.63
HMGN3-201ENST00000275036 HLFQ16534 295 aa18.96■□□□□ 0.63
HMGN3-201ENST00000275036 C9orf131Q5VYM1 1079 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms