RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Rad50P70388 1312 aa20.36■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Med4Q9CQA5 270 aa20.36■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Hoxa7P02830 229 aa20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Cd22P35329 862 aa20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Ttc27Q8CD92 847 aa20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Mon2Q80TL7 1715 aa20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Cfap73J3QPZ5 306 aa20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Cbx1P83917 185 aaKnown RBP20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Eif4a2P10630 407 aa20.35■□□□□ 0.85
Ctcf-201ENSMUST00000005841 C5P06684 1680 aa20.34■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Atp8b2P98199 1209 aa20.34■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Bms1Q6PGF5 1284 aaKnown RBP20.34■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Serpina10Q8R121 448 aa20.34■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Tbc1d8Q9Z1A9 1134 aa20.34■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Slx4ipQ9D7Y9 413 aa20.34■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Tpx2A2APB8 745 aaKnown RBP20.33■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ifi35Q9D8C4 286 aa20.33■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Tshz3Q8CGV9 1081 aa20.33■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Mmel1Q9JLI3 765 aa20.33■□□□□ 0.84
Ctcf-201ENSMUST00000005841 C3P01027 1663 aa20.32■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Oas2E9Q9A9 742 aa20.32■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Gtpbp6Q3U6U5 514 aa20.32■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Mcmdc2E9Q956 681 aa20.32■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Tlcd1Q99JT6 247 aa20.32■□□□□ 0.84
Ctcf-201ENSMUST00000005841 MsnP26041 577 aaKnown RBP20.31■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ccdc178Q8CDV0 866 aa20.31■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Sass6Q80UK7 654 aa20.31■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Gtf3c5Q8R2T8 520 aa20.31■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Nlrp3Q8R4B8 1033 aa20.31■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Cfap157Q0VFX2 523 aa20.31■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Smarce1O54941 411 aaKnown RBP20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ess2O70279 479 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 U2af2P26369 475 aaKnown RBP20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 KinQ8K339 391 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Senp3Q9EP97 568 aaKnown RBP20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Dip2bQ3UH60 1574 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 1700006A11RikB9EHI3 544 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Nphp1Q9QY53 687 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ubn2Q80WC1 1314 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ppp1r42Q8R1Z4 357 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Stx6Q9JKK1 255 aa20.3■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ddx60E9PZQ1 1711 aa20.29■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Phactr2B1AVP0 632 aa20.29■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Nfe2l3Q9WTM4 660 aa20.29■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Adcy9P51830 1353 aa20.29■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ms4a1P19437 291 aa20.28■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Mlh1Q9JK91 760 aa20.28■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Arap3Q8R5G7 1538 aa20.28■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ccz1Q8C1Y8 480 aa20.28■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Ddx41Q91VN6 622 aaKnown RBP20.28■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Gnai2P08752 355 aaKnown RBP20.27■□□□□ 0.84
Ctcf-201ENSMUST00000005841 U2surpQ6NV83 1029 aaKnown RBP20.27■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Samm50Q8BGH2 469 aa20.27■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Cc2d1aQ8K1A6 943 aa20.27■□□□□ 0.84
Ctcf-201ENSMUST00000005841 Vps33aQ9D2N9 598 aa20.27■□□□□ 0.84
Ctcf-201ENSMUST00000005841 D430041D05RikF6ZGR6 1678 aa20.27■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Syt1P46096 421 aa20.26■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Srgap3Q812A2 1099 aa20.26■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Creld2Q9CYA0 350 aa20.26■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Foxp4Q9DBY0 795 aaKnown RBP20.26■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Tpm3P21107 285 aaKnown RBP20.26■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Kcnd1Q03719 651 aa20.26■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Bmp2kQ91Z96 1138 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Ints3Q7TPD0 1041 aaKnown RBP20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Sp8Q8BMJ8 486 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Ulbp1Q8HWA3 334 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 HypkQ9CR41 129 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Q9D9H8 365 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Slit3Q9WVB4 1523 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Hmox1P14901 289 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Usp25P57080 1055 aa20.25■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Als2Q920R0 1651 aa20.24■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Nphp3Q7TNH6 1325 aa20.24■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Cyp2d11P24457 504 aa20.24■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Tsen34Q8BMZ5 316 aa20.24■□□□□ 0.83
Ctcf-201ENSMUST00000005841 MccE9PWI3 1003 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Eef2kO08796 724 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Ecm2Q5FW85 670 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Utp14aQ640M1 767 aaKnown RBP20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Disp3A3KFU9 1347 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Lins1Q3U1D0 764 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Snx13Q6PHS6 957 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Robo1O89026 1612 aa20.23■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Zfp113Q8C689 439 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Chmp4cQ9D7F7 232 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Astn2Q80Z10 1352 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Zkscan7E9PVW1 718 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Card6E9PWH2 1175 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Zscan29E9Q5B4 869 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Birc3O08863 600 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Prim1P20664 417 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Vgll3P85442 326 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Jakmip1Q8BVL9 626 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Igbp1bQ9QZ29 343 aa20.22■□□□□ 0.83
Ctcf-201ENSMUST00000005841 CebpzP53569 1052 aaKnown RBP20.21■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Bach1P97302 739 aa20.21■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Sytl4Q9R0Q1 673 aa20.21■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Atf5O70191 283 aa20.21■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Mcm3P25206 812 aaKnown RBP20.21■□□□□ 0.83
Ctcf-201ENSMUST00000005841 Fam83gQ5SWY7 812 aa20.2■□□□□ 0.82
Retrieved 100 of 22,080 RNA–protein pairs in 14 ms