RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CHCHD6Q9BRQ6 235 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 SPHK1Q9NYA1 384 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 ZNF107Q9UII5 783 aaPredicted RBP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 PA2G4Q9UQ80 394 aaKnown RBP2.81□□□□□ -1.96
SCFD1-219ENST00000556413 MYO3BQ8WXR4 1341 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 PDE4DIPQ5VU43 2346 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 LAMA3Q16787 3333 aa2.81□□□□□ -1.96
SCFD1-219ENST00000556413 RANBP2P49792 3224 aaKnown RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 EYSQ5T1H1 3165 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 AKAP11Q9UKA4 1901 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 AGAP14A8MT82 685 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 EPHB6O15197 1021 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 PAPSS1O43252 624 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 XRCC3O43542 346 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 GPRIN2O60269 458 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 MITFO75030 526 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 CREG1O75629 220 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 ETV5P41161 510 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 TSFMP43897 325 aaKnown RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 TPD52P55327 224 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 CCDC57Q2TAC2 916 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 CES4AQ5XG92 561 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 APOBEC3HQ6NTF7 200 aaKnown RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 GDPGP1Q6ZNW5 385 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 CEACAM19Q7Z692 300 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 SLC25A42Q86VD7 318 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 FAM9BQ8IZU0 186 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 METTL4Q8N3J2 472 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 FGFRL1Q8N441 504 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 ANKRD13CQ8N6S4 541 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 TEX19Q8NA77 164 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 PAPD5Q8NDF8 572 aaKnown RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 OR11H4Q8NGC9 324 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 TYMSOSQ8TAI1 123 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 APOBEC4Q8WW27 367 aaKnown RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 RFT1Q96AA3 541 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 NKX3-1Q99801 234 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 FNDC11Q9BVV2 318 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 ANKRD2Q9GZV1 360 aa2.8□□□□□ -1.96
SCFD1-219ENST00000556413 PNNQ9H307 717 aaKnown RBP2.8□□□□□ -1.96
SCFD1-219ENST00000556413 FAM205AQ6ZU69 1335 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 SHISA9B4DS77 424 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 OR10H2O60403 315 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 GJB3O75712 270 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 CDH3P22223 829 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 ARF3P61204 181 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-219ENST00000556413 ARF1P84077 181 aaKnown RBP2.79□□□□□ -1.96
SCFD1-219ENST00000556413 TAF10Q12962 218 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 PPIL2Q13356 520 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 SIM2Q14190 667 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-219ENST00000556413 CCL14Q16627 93 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 EIPR1Q53HC9 387 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 LCN1P1Q5VSP4 162 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 CDC42EP5Q6NZY7 148 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 FIGLAQ6QHK4 219 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 ZNF841Q6ZN19 808 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 Q6ZVH6 145 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 DEFB123Q8N688 67 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 SUMF1Q8NBK3 374 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 TEKT1Q969V4 418 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 SKA1Q96BD8 255 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 ATXN7L3BQ96GX2 97 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 CEP295NLQ96MC4 621 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 RAD9AQ99638 391 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 TDRD1Q9BXT4 1180 aaKnown RBP2.79□□□□□ -1.96
SCFD1-219ENST00000556413 HRH4Q9H3N8 390 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 HEXA-AS1Q9H8Q6 139 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 WSB2Q9NYS7 404 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-219ENST00000556413 TMOD2Q9NZR1 351 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 LARSQ9P2J5 1176 aaKnown RBP2.79□□□□□ -1.96
SCFD1-219ENST00000556413 PLAGL1Q9UM63 463 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 PSME4Q14997 1843 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 A0A1B0GUL6 1792 aa2.79□□□□□ -1.96
SCFD1-219ENST00000556413 PFASO15067 1338 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 TRIOBPQ9H2D6 2365 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 A0A087WUV0 522 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-219ENST00000556413 LNP1A1A4G5 178 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 ENO4A6NNW6 628 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 AP3D1O14617 1153 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 VILLO15195 856 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 TRUB2O95900 331 aaKnown RBP2.78□□□□□ -1.96
SCFD1-219ENST00000556413 CYP2B6P20813 491 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 CCND3P30281 292 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-219ENST00000556413 GABRA5P31644 462 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 CAPGP40121 348 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 BTDP43251 543 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 HMGCS2P54868 508 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 MFAP4P55083 255 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 XGP55808 180 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 UBXN2AP68543 259 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 LRRC26Q2I0M4 334 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 RAB41Q5JT25 222 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 WDR78Q5VTH9 848 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 ANKRD23Q86SG2 305 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 ERO1BQ86YB8 467 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 NPRL2Q8WTW4 380 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 CCDC107Q8WV48 283 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 GUCD1Q96NT3 240 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 PARK7Q99497 189 aaKnown RBP2.78□□□□□ -1.96
SCFD1-219ENST00000556413 BARD1Q99728 777 aaKnown RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms