RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RBMS3Q6XE24 437 aaKnown RBP6.6□□□□□ -1.35
NUP54-215ENST00000514313 SLC24A5Q71RS6 500 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 COX8CQ7Z4L0 72 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 ZC3H3Q8IXZ2 948 aaKnown RBP6.6□□□□□ -1.35
NUP54-215ENST00000514313 BATF2Q8N1L9 274 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 SLC37A3Q8NCC5 494 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 CCNYQ8ND76 341 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 KLHDC9Q8NEP7 349 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 FAM111AQ96PZ2 611 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 ZNF577Q9BSK1 485 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 SIX2Q9NPC8 291 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 INTS9Q9NV88 658 aaKnown RBP6.6□□□□□ -1.35
NUP54-215ENST00000514313 FAM118AQ9NWS6 357 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 PSORS1C1Q9UIG5 152 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 GRID1Q9ULK0 1009 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 KCNJ14Q9UNX9 436 aa6.6□□□□□ -1.35
NUP54-215ENST00000514313 NPHP3Q7Z494 1330 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 DENND3A2RUS2 1198 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 CCDC162PA2VCL2 907 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 OVOL3O00110 214 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 SLC28A1O00337 649 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 BUB3O43684 328 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 HSF2BPO75031 334 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 CDK2AP2O75956 126 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 STBD1O95210 358 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 GAS8O95995 478 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 FGF3P11487 239 aaPredicted RBP6.59□□□□□ -1.35
NUP54-215ENST00000514313 KRT3P12035 628 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 PAX1P15863 534 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 CCNA2P20248 432 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 CAMLGP49069 296 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TRIM29Q14134 588 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 DHRS11Q6UWP2 260 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TMEM207Q6UWW9 146 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 SLC16A9Q7RTY1 509 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 ADAMTSL2Q86TH1 951 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TRPT1Q86TN4 253 aaKnown RBP6.59□□□□□ -1.35
NUP54-215ENST00000514313 STHQ8IWL8 128 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TMEM185AQ8NFB2 350 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TM9SF4Q92544 642 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 HAS2Q92819 552 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 ULK4Q96C45 1275 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 NTMT1Q9BV86 223 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TMEM245Q9H330 911 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 ZDHHC6Q9H6R6 413 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 EGLN3Q9H6Z9 239 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 MIS18AQ9NYP9 233 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 ACTR3BQ9P1U1 418 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 PILRBQ9UKJ0 227 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 TSPAN16Q9UKR8 245 aa6.59□□□□□ -1.35
NUP54-215ENST00000514313 A0A1B0GUV1 79 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 M0R296 226 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 EPHB6O15197 1021 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 TXNL1O43396 289 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 GRAP2O75791 330 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 CRYAAP02489 173 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 CHRNGP07510 517 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 CCDC192P0DO97 292 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 SNHG28P0DPA3 235 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 SKILP12757 684 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 AREGP15514 252 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 FERP16591 822 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 GJB2P29033 226 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 HUNKP57058 714 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 EVCP57679 992 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 CDR2Q01850 454 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 TSTA3Q13630 321 aaPredicted RBP6.58□□□□□ -1.36
NUP54-215ENST00000514313 CDH18Q13634 790 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 PRAMEF7Q5VXH5 474 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 ZCCHC12Q6PEW1 402 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 ISLR2Q6UXK2 745 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 ELMOD2Q8IZ81 293 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 STPG4Q8N801 248 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 OR4A16Q8NH70 328 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 HPSE2Q8WWQ2 592 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 SEPT8Q92599 483 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 NEDD4LQ96PU5 975 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 WWTR1Q9GZV5 400 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 EXOC1Q9NV70 894 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 TBC1D13Q9NVG8 400 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 PPP2R2CQ9Y2T4 447 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 SH3GLB1Q9Y371 365 aa6.58□□□□□ -1.36
NUP54-215ENST00000514313 CHUKO15111 745 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 ETS1P14921 441 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 ITGA3P26006 1051 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 TNFSF10P50591 281 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 CLCN4P51793 760 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 HNRNPFP52597 415 aaKnown RBP6.57□□□□□ -1.36
NUP54-215ENST00000514313 PPP1R8Q12972 351 aaKnown RBP6.57□□□□□ -1.36
NUP54-215ENST00000514313 ACCSLQ4AC99 568 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 NEK5Q6P3R8 708 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 SAMD14Q8IZD0 417 aaPredicted RBP6.57□□□□□ -1.36
NUP54-215ENST00000514313 KDM8Q8N371 416 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 RFLNBQ8N5W9 214 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 TMEM99Q8N816 258 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 CNNM3Q8NE01 707 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 ANKRD20A12PQ8NF67 263 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 OR1L3Q8NH93 324 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 TAF4BQ92750 862 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 TMEM186Q96B77 213 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms