RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 VPS33AQ96AX1 596 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 TMEM74Q96NL1 305 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 SORBS1Q9BX66 1292 aaKnown RBP17.78■□□□□ 0.44
CLN3-206ENST00000360019 DPY30Q9C005 99 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 PILRAQ9UKJ1 303 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 LRIT2A6NDA9 550 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 YKT6O15498 198 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 GSC2O15499 205 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 NDUFS4O43181 175 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 PCDH7O60245 1069 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 MYO1DO94832 1006 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 KLHL18O94889 574 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 EPN2O95208 641 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 GBAP04062 536 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 GLB1P16278 677 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 MPLP40238 635 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 CCT8P50990 548 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 EPHA4P54764 986 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 ZCCHC8Q6NZY4 707 aaKnown RBP17.77■□□□□ 0.44
CLN3-206ENST00000360019 OR4C6Q8NH72 309 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 TSPEARQ8WU66 669 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 OR2A5Q96R48 311 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 DUSP23Q9BVJ7 150 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 CLMPQ9H6B4 373 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 EFCAB1Q9HAE3 211 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 ASXL3Q9C0F0 2248 aa17.77■□□□□ 0.44
CLN3-206ENST00000360019 A0A1W2PP18 115 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 TNFRSF10AO00220 468 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 RTCAO00442 366 aaKnown RBP17.77■□□□□ 0.43
CLN3-206ENST00000360019 ANXA4P09525 319 aaPredicted RBP17.77■□□□□ 0.43
CLN3-206ENST00000360019 ALDH4A1P30038 563 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 MMEL1Q495T6 779 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 TIGD2Q4W5G0 525 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 IRGCQ6NXR0 463 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 UBE3DQ7Z6J8 389 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 RIMKLAQ8IXN7 391 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 DSELQ8IZU8 1212 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 TRPV3Q8NET8 790 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 REXO4Q9GZR2 422 aaKnown RBP17.77■□□□□ 0.43
CLN3-206ENST00000360019 ARRDC1-AS1Q9H2J1 176 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 SEMA6CQ9H3T2 930 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 LHX9Q9NQ69 397 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 NDUFAF1Q9Y375 327 aa17.77■□□□□ 0.43
CLN3-206ENST00000360019 A0A0J9YVX5 310 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 CFAP73A6NFT4 308 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 CCDC154A6NI56 674 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 BBIP1A8MTZ0 92 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 LRATO95237 230 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 CER1O95813 267 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 KLK1P06870 262 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 KRT16P08779 473 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 NQO1P15559 274 aaKnown RBP17.76■□□□□ 0.43
CLN3-206ENST00000360019 ST6GAL1P15907 406 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 BSGP35613 385 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 DGKQP52824 942 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 OR1D5P58170 312 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 RELAQ04206 551 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 NR1D2Q14995 579 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 ADPRMQ3LIE5 342 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 DNAL1Q4LDG9 190 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 NKAIN2Q5VXU1 208 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 FAM9CQ8IZT9 166 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 GLB1L3Q8NCI6 653 aaPredicted RBP17.76■□□□□ 0.43
CLN3-206ENST00000360019 GFM2Q969S9 779 aaKnown RBP17.76■□□□□ 0.43
CLN3-206ENST00000360019 LOXL4Q96JB6 756 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 KLHL31Q9H511 634 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 MAP10Q9P2G4 905 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 GMEB2Q9UKD1 530 aa17.76■□□□□ 0.43
CLN3-206ENST00000360019 IGHV1OR21-1A0A087WYE8 117 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 LY6G6EA0A0G2JKS1 128 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 GNG14A0A1W2PPG7 69 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 C4orf51C9J302 202 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 MRASO14807 208 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 ANGPT2O15123 496 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 CAPN5O15484 640 aaPredicted RBP17.75■□□□□ 0.43
CLN3-206ENST00000360019 SIGLEC6O43699 453 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 SH3BP5O60239 455 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 ALPPL2P10696 532 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 CDH3P22223 829 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 TPP2P29144 1249 aaPredicted RBP17.75■□□□□ 0.43
CLN3-206ENST00000360019 GFERP55789 205 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 TLR1Q15399 786 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 HKDC1Q2TB90 917 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 FAM174BQ3ZCQ3 159 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 SPANXN4Q5MJ08 99 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 FRMPD2BQ6IN97 320 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 RNF44Q7L0R7 432 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-206ENST00000360019 SLC13A3Q8WWT9 602 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 TRAPPC9Q96Q05 1148 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 ZBTB18Q99592 522 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 MAP3K3Q99759 626 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 ZFYVE21Q9BQ24 234 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 AHSPQ9NZD4 102 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 MCM8Q9UJA3 840 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 PADI4Q9UM07 663 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 U3KQA8 63 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 PRR33A8MZF0 331 aa17.75■□□□□ 0.43
CLN3-206ENST00000360019 KIF1CO43896 1103 aaKnown RBP17.75■□□□□ 0.43
CLN3-206ENST00000360019 EEDO75530 441 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms