RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CNDP1Q96KN2 507 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 PWWP2AQ96N64 755 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 OLFM1Q99784 485 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 MESP1Q9BRJ9 268 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 WDR83Q9BRX9 315 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 TRIM51Q9BSJ1 452 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC17A6Q9P2U8 582 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 SH2B3Q9UQQ2 575 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 MRPS2Q9Y399 296 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 CSAG2Q9Y5P2 127 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 FEZF1A0PJY2 475 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 TP73O15350 636 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 LCMT2O60294 686 aaKnown RBP18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 SEMA7AO75326 666 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 MYBL2P10244 700 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 ZNF37AP17032 561 aaPredicted RBP18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 AGTR2P50052 363 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 ARG2P78540 354 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 MAT1AQ00266 395 aaKnown RBP18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 CDC16Q13042 620 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 CSHL1Q14406 222 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 PCOLCEQ15113 449 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 FAAH2Q6GMR7 532 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 ZC3HC1Q86WB0 502 aaKnown RBP18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 ANKMY2Q8IV38 441 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 ST6GALNAC3Q8NDV1 305 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 FBXO36Q8NEA4 188 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 BRIX1Q8TDN6 353 aaKnown RBP18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 VPS39Q96JC1 886 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 IMMP1LQ96LU5 166 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 CYTH2Q99418 400 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 VN1R1Q9GZP7 353 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 RNF32Q9H0A6 362 aa18.04■□□□□ 0.48
CCDC28A-203ENST00000617445 TRBC2A0A5B9 178 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 CYSRT1A8MQ03 144 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 IL1RNP18510 177 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 XCR1P46094 333 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 CDKL1Q00532 357 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 ZXDCQ2QGD7 858 aaPredicted RBP18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 SBSNQ6UWP8 590 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 MAATS1Q7Z4T9 603 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 CPEB2Q7Z5Q1 589 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 KCT2Q8NC54 265 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 FAR1Q8WVX9 515 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 PYCR2Q96C36 320 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 OR1F2PQ96R84 312 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 KRT12Q99456 494 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 TRIM31Q9BZY9 425 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 CLK4Q9HAZ1 481 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 POPDC3Q9HBV1 291 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 PTGFRNQ9P2B2 879 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 TEKT2Q9UIF3 430 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 NTNG1Q9Y2I2 539 aa18.03■□□□□ 0.48
CCDC28A-203ENST00000617445 DIDO1Q9BTC0 2240 aaKnown RBP18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 TRAV17A0A0B4J275 112 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 FAM187AA6NFU0 413 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 SGK494L7N484 410 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 OR1F1O43749 312 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 UTP20O75691 2785 aaKnown RBP18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 GUCA1CO95843 209 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 STATHP02808 62 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 UQCRHP07919 91 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 AHRP35869 848 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 RPL21P46778 160 aaKnown RBP18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 HNMTP50135 292 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 CALCOCO2Q13137 446 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 INAQ16352 499 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 MINDY4Q4G0A6 757 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 MFSD4BQ5TF39 518 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 AFAP1L2Q8N4X5 818 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 OR1N1Q8NGS0 311 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 GRHL3Q8TE85 626 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC5A11Q8WWX8 675 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 OR4K3Q96R72 315 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 MACROD1Q9BQ69 325 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 RHOJQ9H4E5 214 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 WHRNQ9P202 907 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 ZFP69BQ9UJL9 534 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC5A6Q9Y289 635 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 DYRK1BQ9Y463 629 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 PSAT1Q9Y617 370 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 KCNE2Q9Y6J6 123 aa18.02■□□□□ 0.48
CCDC28A-203ENST00000617445 CPAMD8Q8IZJ3 1885 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 FAM95CA0A1B0GW59 222 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 WIPF3A6NGB9 483 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 URADA6NGE7 173 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 EIF3HO15372 352 aaKnown RBP eCLIP18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 EDN3P14138 238 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 TNFSF10P50591 281 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 RGS1Q08116 209 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 PPP1R3AQ16821 1122 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 PLAG1Q6DJT9 500 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 FAM180AQ6UWF9 173 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 TMEM207Q6UWW9 146 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 CYS1Q717R9 158 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 PRSS41Q7RTY9 318 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 ADAMTSL2Q86TH1 951 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 ZBED8Q8IZ13 594 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 SIRT6Q8N6T7 355 aa18.01■□□□□ 0.47
CCDC28A-203ENST00000617445 BCORP1Q8N888 145 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms