RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 BCKDHAP12694 445 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 EZRP15311 586 aaKnown RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 TYRP1P17643 537 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PTPN4P29074 926 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 ZFP36L2P47974 494 aaKnown RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 PPP1CAP62136 330 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 ACTN3Q08043 901 aaPredicted RBP17.84■□□□□ 0.45
CLN3-206ENST00000360019 PTGR1Q14914 329 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 HLA-BQ31612 363 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 SPESP1Q6UW49 350 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 KANSL1Q7Z3B3 1105 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PAQR7Q86WK9 346 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 OOSP2Q86WS3 158 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 LIX1Q8N485 282 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PROKR1Q8TCW9 393 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PPM1MQ96MI6 270 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 OR51B5Q9H339 312 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 SYNPO2LQ9H987 977 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 IL21RQ9HBE5 538 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 EVA1BQ9NVM1 165 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 TAS2R1Q9NYW7 299 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 ZIM2Q9NZV7 527 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 PPT2Q9UMR5 302 aa17.84■□□□□ 0.45
CLN3-206ENST00000360019 ANKDD1BA6NHY2 528 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 LILRA5A6NI73 299 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 MAGP20916 626 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 HRH2P25021 359 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 IL12AP29459 219 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 BCL6P41182 706 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 LSSP48449 732 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 RASSF2P50749 326 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 PHEXP78562 749 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 RBM15BQ8NDT2 890 aaKnown RBP17.83■□□□□ 0.44
CLN3-206ENST00000360019 SARGQ9BW04 601 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 BAIAP2L1Q9UHR4 511 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 ADGRE2Q9UHX3 823 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 SNX7Q9UNH6 387 aa17.83■□□□□ 0.44
CLN3-206ENST00000360019 SAP18O00422 153 aaKnown RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 SLC22A3O75751 556 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 UBXN7O94888 489 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SNRPB2P08579 225 aaKnown RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 ACPPP15309 386 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SDC1P18827 310 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 TACR1P25103 407 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 GRK3P35626 688 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 RAE1P78406 368 aaKnown RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 BIRC2Q13490 618 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 MAPRE2Q15555 327 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SLC5A12Q1EHB4 618 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 CACHD1Q5VU97 1274 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 NOXRED1Q6NXP6 359 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 GATAD2AQ86YP4 633 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SLC35F3Q8IY50 421 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 C1orf52Q8N6N3 182 aaKnown RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 ARL10Q8N8L6 244 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 CEP76Q8TAP6 659 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 CHTF18Q8WVB6 975 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 METTL2AQ96IZ6 378 aaKnown RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 SLC38A3Q99624 504 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 BTBD10Q9BSF8 475 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 MS4A8Q9BY19 250 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 GPR179Q6PRD1 2367 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 OR2A25A4D2G3 310 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 TNFSF14O43557 240 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 DNAJC8O75937 253 aaPredicted RBP17.82■□□□□ 0.44
CLN3-206ENST00000360019 SERPINB1P30740 379 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 CPOXP36551 454 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 ACSM2AQ08AH3 577 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 CUL3Q13618 768 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 ACSM2BQ68CK6 577 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 FCRL6Q6DN72 434 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 BLOC1S3Q6QNY0 202 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 RABEPKQ7Z6M1 372 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 PARP9Q8IXQ6 854 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SAP25Q8TEE9 199 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 CREB3L4Q8TEY5 395 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 NUDT8Q8WV74 236 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 RCN3Q96D15 328 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SERPINI1Q99574 410 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 RTKNQ9BST9 563 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 EBPLQ9BY08 206 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 SLC52A3Q9NQ40 469 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 RNF215Q9Y6U7 377 aa17.82■□□□□ 0.44
CLN3-206ENST00000360019 NR5A2O00482 541 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 CAPN3P20807 821 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 JAK1P23458 1154 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 PTX3P26022 381 aaPredicted RBP17.81■□□□□ 0.44
CLN3-206ENST00000360019 DPP6P42658 865 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 CAPZBP47756 277 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 MNAT1P51948 309 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 KCNJ2P63252 427 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 RCAN2Q14206 197 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 SPIN4Q56A73 249 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 TRIM61Q5EBN2 209 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 SLC23A3Q6PIS1 610 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 RIPOR1Q6ZS17 1223 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 CLHC1Q8NHS4 586 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 FCRL4Q96PJ5 515 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 SLC25A23Q9BV35 468 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms