RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 PNMA8BQ9ULN7 279 aaPredicted RBP21.86■■□□□ 1.09
CDX1-201ENST00000231656 CD22P20273 847 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 GTF2A1P52655 376 aaPredicted RBP21.85■■□□□ 1.09
CDX1-201ENST00000231656 TRIP10Q15642 601 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 FRG2Q64ET8 278 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 C1orf210Q8IVY1 113 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 TMEM105Q8N8V8 129 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 FAM174AQ8TBP5 190 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 FRG2BQ96QU4 278 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 GPR27Q9NS67 375 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 LRCH1Q9Y2L9 728 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 PLEKHM1Q9Y4G2 1056 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 THADAQ6YHU6 1953 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 SDK1Q7Z5N4 2213 aa21.85■■□□□ 1.09
CDX1-201ENST00000231656 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 THEGLP0DJG4 465 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 BCKDHAP12694 445 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 MAOBP27338 520 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 DGKQP52824 942 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 IRF8Q02556 426 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 OGFRL1Q5TC84 451 aaPredicted RBP21.84■■□□□ 1.09
CDX1-201ENST00000231656 DLEU7Q6UYE1 221 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 DHFR2Q86XF0 187 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 TMEFF1Q8IYR6 380 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 MAML2Q8IZL2 1156 aaPredicted RBP21.84■■□□□ 1.09
CDX1-201ENST00000231656 LILRA2Q8N149 483 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 GLB1L3Q8NCI6 653 aaPredicted RBP21.84■■□□□ 1.09
CDX1-201ENST00000231656 DNAJB14Q8TBM8 379 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 ZUFSPQ96AP4 578 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 MED8Q96G25 268 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 ZBTB18Q99592 522 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 TRIM8Q9BZR9 551 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 KLHL4Q9C0H6 718 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 VCX3BQ9H321 246 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 E7EQ34 232 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 SCAMP1O15126 338 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 PEX1O43933 1283 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 KCNJ13O60928 360 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 ATP6V1B2P21281 511 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 ACADLP28330 430 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 CASP2P42575 452 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 SRP54P61011 504 aaKnown RBP21.84■■□□□ 1.09
CDX1-201ENST00000231656 BNIP2Q12982 314 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 ALG11Q2TAA5 492 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 RABL3Q5HYI8 236 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 PRR23BQ6ZRT6 265 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 RD3Q7Z3Z2 195 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 PDSS2Q86YH6 399 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 TMEM126BQ8IUX1 230 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 SPDYE1Q8NFV5 336 aaPredicted RBP21.84■■□□□ 1.09
CDX1-201ENST00000231656 CMTM7Q96FZ5 175 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 OR2M4Q96R27 311 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 DPY30Q9C005 99 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 KCNK6Q9Y257 313 aa21.84■■□□□ 1.09
CDX1-201ENST00000231656 SPTY2D1-AS1A0A0U1RR47 76 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 PRR19A6NJB7 356 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 ZNF33BQ06732 778 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 DOC2AQ14183 400 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 XKR6Q5GH73 641 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 NANOGP8Q6NSW7 305 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 CYP2R1Q6VVX0 501 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 PDZD3Q86UT5 571 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 WDR5BQ86VZ2 330 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 SLCO4A1Q96BD0 722 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 KLHDC7BQ96G42 594 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 DUSP15Q9H1R2 295 aaPredicted RBP21.83■■□□□ 1.09
CDX1-201ENST00000231656 OSGEPL1Q9H4B0 414 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 CLMPQ9H6B4 373 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 NANOGQ9H9S0 305 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 ACSL5Q9ULC5 683 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 DLGAP4Q9Y2H0 992 aa21.83■■□□□ 1.09
CDX1-201ENST00000231656 C15orf38-AP3S2A0A0A6YYH1 394 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 RPL10P27635 214 aaKnown RBP21.82■■□□□ 1.08
CDX1-201ENST00000231656 GSK3BP49841 420 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 EEFSECP57772 596 aaKnown RBP21.82■■□□□ 1.08
CDX1-201ENST00000231656 LRRC36Q1X8D7 754 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 SFT2D3Q587I9 215 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 GRHL2Q6ISB3 625 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 ARPINQ7Z6K5 226 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 HID1Q8IV36 788 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 WDR20Q8TBZ3 569 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 ZNF480Q8WV37 535 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 PKP2Q99959 881 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 ZDHHC5Q9C0B5 715 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 COPS7BQ9H9Q2 264 aaPredicted RBP21.82■■□□□ 1.08
CDX1-201ENST00000231656 NEUROG3Q9Y4Z2 214 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 SPAG17Q6Q759 2223 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 PRPS2P11908 318 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 ACPPP15309 386 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 CD38P28907 300 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 RACK1P63244 317 aaKnown RBP21.82■■□□□ 1.08
CDX1-201ENST00000231656 CSTF1Q05048 431 aaKnown RBP21.82■■□□□ 1.08
CDX1-201ENST00000231656 PWP1Q13610 501 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 E2F2Q14209 437 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 LCN8Q6JVE9 175 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 KRTCAP2Q8N6L1 136 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 MFSD2AQ8NA29 543 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 C1orf216Q8TAB5 229 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 SLC13A3Q8WWT9 602 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 APIPQ96GX9 242 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms