RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	MTO1	Q9Y2Z2	717 aa	Known RBP	10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	PCDHB3	Q9Y5E6	796 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	PCDHGA4	Q9Y5G9	962 aa		10.64	□□□□□ -0.71
DDB1-222	ENST00000543627	PKD1L2	Q7Z442	2459 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	TCRBV9S1A1T	A0A576	114 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	ZNF839	A8K0R7	811 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	FAM155B	O75949	473 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SLC16A8	O95907	504 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	RHOXF2B	P0C7M4	288 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	F8A1	P23610	371 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	STAT5A	P42229	794 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	VSX2	P58304	361 aa	Predicted RBP	10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	GPX6	P59796	221 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	RPS15	P62841	145 aa	Known RBP	10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	GPS2	Q13227	327 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	USP10	Q14694	798 aa	Known RBP	10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SLC9A5	Q14940	896 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	PTCHD3	Q3KNS1	767 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	ATP1A1-AS1	Q5TC04	95 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	MLIP	Q5VWP3	458 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	FCRL6	Q6DN72	434 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	MBOAT1	Q6ZNC8	495 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SLC26A11	Q86WA9	606 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	ZC3HC1	Q86WB0	502 aa	Known RBP	10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SPATA6L	Q8N4H0	392 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SLC38A9	Q8NBW4	561 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	OR8K5	Q8NH50	307 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	CT55	Q8WUE5	264 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	ZNF480	Q8WV37	535 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	EXTL1	Q92935	676 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	VPS39	Q96JC1	886 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	FCRL4	Q96PJ5	515 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	RUFY1	Q96T51	708 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	RHOXF2	Q9BQY4	288 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	DPH7	Q9BTV6	452 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	EFHD1	Q9BUP0	239 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	TRIM54	Q9BYV2	358 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SPRY4	Q9C004	299 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	CAB39L	Q9H9S4	337 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	SYTL2	Q9HCH5	934 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	LRRC4C	Q9HCJ2	640 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	GPAM	Q9HCL2	828 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	TXLNG	Q9NUQ3	528 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	EURL	Q9NYK6	297 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	KLHL42	Q9P2K6	505 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	PLCL2	Q9UPR0	1127 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	ATRX	P46100	2492 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	NBEA	Q8NFP9	2946 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	AHCTF1	Q8WYP5	2266 aa		10.63	□□□□□ -0.71
DDB1-222	ENST00000543627	CDC14C	A4D256	554 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	ZNF891	A8MT65	544 aa	Predicted RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	GFY	I3L273	518 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	MYO1C	O00159	1063 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	MEN1	O00255	615 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	C8G	P07360	202 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	AGXT	P21549	392 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	FDXR	P22570	491 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	HSD17B2	P37059	387 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	TAS2R39	P59534	338 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	RPS18	P62269	152 aa	Known RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	NAE1	Q13564	534 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	DNASE1L3	Q13609	305 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	FRG1	Q14331	258 aa	Known RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	SLMAP	Q14BN4	828 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	EFTUD2	Q15029	972 aa	Known RBP eCLIP	10.62	□□□□□ -0.71	7e-7	■■■□□ 16.2
DDB1-222	ENST00000543627	CYP2A13	Q16696	494 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	DEFB109B	Q30KR1	87 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	KBTBD12	Q3ZCT8	623 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	ZC3H12B	Q5HYM0	836 aa	Known RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	LRRC8E	Q6NSJ5	796 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	RAPH1	Q70E73	1250 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	DNAJC22	Q8N4W6	341 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	OR2L3	Q8NG85	312 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	OR2A1	Q8NGT9	310 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	UHMK1	Q8TAS1	419 aa	Known RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	STARD8	Q92502	1023 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	DLG3	Q92796	817 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	CCDC138	Q96M89	665 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	SELENOS	Q9BQE4	189 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	NDC1	Q9BTX1	674 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	TWSG1	Q9GZX9	223 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	CHST8	Q9H2A9	424 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	PARVB	Q9HBI1	364 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	PRM3	Q9NNZ6	103 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	ARL15	Q9NXU5	204 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	STOX2	Q9P2F5	926 aa	Predicted RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	DHCR7	Q9UBM7	475 aa	Known RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	GPN3	Q9UHW5	284 aa	Predicted RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	CORO1C	Q9ULV4	474 aa	Predicted RBP	10.62	□□□□□ -0.71
DDB1-222	ENST00000543627	PDE10A	Q9Y233	779 aa		10.62	□□□□□ -0.71
DDB1-222	ENST00000543627		A0A1W2PPV9	198 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	NPEPPSL1	A6NEC2	478 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	CDC7	O00311	574 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	ZSCAN9	O15535	394 aa	Predicted RBP	10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	PHGDH	O43175	533 aa	Known RBP	10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	NRP2	O60462	931 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	STATH	P02808	62 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	HBQ1	P09105	142 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	GSTA2	P09210	222 aa		10.61	□□□□□ -0.71
DDB1-222	ENST00000543627	IMPA1	P29218	277 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms