RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TDRD6O60522 2096 aaKnown RBP18■□□□□ 0.47
CLN3-206ENST00000360019 A0A1W2PPV9 198 aa18■□□□□ 0.47
CLN3-206ENST00000360019 VILLO15195 856 aa18■□□□□ 0.47
CLN3-206ENST00000360019 GPR37L1O60883 481 aa18■□□□□ 0.47
CLN3-206ENST00000360019 NCF2P19878 526 aaPredicted RBP18■□□□□ 0.47
CLN3-206ENST00000360019 PKLRP30613 574 aa18■□□□□ 0.47
CLN3-206ENST00000360019 RAB28P51157 221 aa18■□□□□ 0.47
CLN3-206ENST00000360019 AFF3P51826 1226 aaKnown RBP18■□□□□ 0.47
CLN3-206ENST00000360019 IRF8Q02556 426 aa18■□□□□ 0.47
CLN3-206ENST00000360019 DOC2AQ14183 400 aa18■□□□□ 0.47
CLN3-206ENST00000360019 XKR6Q5GH73 641 aa18■□□□□ 0.47
CLN3-206ENST00000360019 PRAMEF14Q5SWL7 426 aa18■□□□□ 0.47
CLN3-206ENST00000360019 PRAMEF13Q5VWM6 474 aa18■□□□□ 0.47
CLN3-206ENST00000360019 LYSMD4Q5XG99 296 aa18■□□□□ 0.47
CLN3-206ENST00000360019 IYDQ6PHW0 289 aa18■□□□□ 0.47
CLN3-206ENST00000360019 IL27RAQ6UWB1 636 aa18■□□□□ 0.47
CLN3-206ENST00000360019 YTHDF3Q7Z739 585 aaKnown RBP18■□□□□ 0.47
CLN3-206ENST00000360019 TAF8Q7Z7C8 310 aa18■□□□□ 0.47
CLN3-206ENST00000360019 SFTPA2Q8IWL1 248 aa18■□□□□ 0.47
CLN3-206ENST00000360019 OR2T11Q8NH01 316 aa18■□□□□ 0.47
CLN3-206ENST00000360019 MIPEPQ99797 713 aa18■□□□□ 0.47
CLN3-206ENST00000360019 SLC29A3Q9BZD2 475 aa18■□□□□ 0.47
CLN3-206ENST00000360019 FARSBQ9NSD9 589 aaKnown RBP18■□□□□ 0.47
CLN3-206ENST00000360019 GIMAP2Q9UG22 337 aa18■□□□□ 0.47
CLN3-206ENST00000360019 COLEC10Q9Y6Z7 277 aa18■□□□□ 0.47
CLN3-206ENST00000360019 UGDHO60701 494 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 GNAZP19086 355 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 CCND1P24385 295 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 DHPSP49366 369 aaPredicted RBP17.99■□□□□ 0.47
CLN3-206ENST00000360019 E2F2Q14209 437 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 LIPJQ5W064 366 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 FAM91A1Q658Y4 838 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 SLCO4C1Q6ZQN7 724 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 GBP7Q8N8V2 638 aaPredicted RBP17.99■□□□□ 0.47
CLN3-206ENST00000360019 CXorf40BQ96DE9 158 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 CCDC106Q9BWC9 280 aa17.99■□□□□ 0.47
CLN3-206ENST00000360019 ZNF839A8K0R7 811 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 MANBAO00462 879 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 CLGNO14967 610 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 HRO43593 1189 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 JUPP14923 745 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 VARSP26640 1264 aaKnown RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 NDUFS1P28331 727 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 CATSPEREQ5SY80 951 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 THEMIS2Q5TEJ8 643 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 LCTLQ6UWM7 567 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 Q6ZSR9 355 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 TMPRSS11BQ86T26 416 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 TREML1Q86YW5 311 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 RAB42Q8N4Z0 105 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 HMGCLL1Q8TB92 370 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 SETD7Q8WTS6 366 aaKnown RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 JPH3Q8WXH2 748 aaPredicted RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 SMPDL3AQ92484 453 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 USP7Q93009 1102 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 TUBGCP3Q96CW5 907 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 MARK4Q96L34 752 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 ZNF385DQ9H6B1 395 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 FBXO4Q9UKT5 387 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 TRIM33Q9UPN9 1127 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 DYRK1BQ9Y463 629 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 CAPN14A8MX76 684 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 PRR35P0CG20 571 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 PSMB5P28074 263 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 HNRNPH2P55795 449 aaKnown RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 YBX1P67809 324 aaKnown RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 ZRSR2Q15696 482 aaKnown RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 PLK5Q496M5 336 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 GRHL2Q6ISB3 625 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 RNF165Q6ZSG1 346 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 CHSY3Q70JA7 882 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 C11orf74Q86VG3 221 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 NAGSQ8N159 534 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 OR2L8Q8NGY9 312 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 SLC5A11Q8WWX8 675 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 MAGEB10Q96LZ2 347 aaPredicted RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 CATSPER2Q96P56 530 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 CCT7Q99832 543 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 ACAT2Q9BWD1 397 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 RAB11FIP5Q9BXF6 653 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 TMEM74BQ9NUR3 256 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 TAC3Q9UHF0 121 aa17.98■□□□□ 0.47
CLN3-206ENST00000360019 G3BP2Q9UN86 482 aaKnown RBP17.98■□□□□ 0.47
CLN3-206ENST00000360019 PRR5-ARHGAP8B1AHC4 643 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 ULK1O75385 1050 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 CASP2P42575 452 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 C21orf59P57076 290 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 BNIP1Q12981 228 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 TBCCQ15814 346 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 SGO1Q5FBB7 561 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 WDR34Q96EX3 536 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 SLC40A1Q9NP59 571 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 ZNF490Q9ULM2 529 aaPredicted RBP17.97■□□□□ 0.47
CLN3-206ENST00000360019 CCL27Q9Y4X3 112 aa17.97■□□□□ 0.47
CLN3-206ENST00000360019 A0A1B0GVT2 93 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 KIAA0754O94854 1291 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 CBX6O95503 412 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 KRT6AP02538 564 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 KRT6BP04259 564 aa17.96■□□□□ 0.47
CLN3-206ENST00000360019 ALDOCP09972 364 aaKnown RBP17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms