RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 HOMEZQ8IX15 550 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 FAM156AQ8NDB6 213 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 DNAJC9Q8WXX5 260 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 FBXL8Q96CD0 374 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 ASB9Q96DX5 294 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 LINC00615Q96LM1 132 aaPredicted RBP21.96■■□□□ 1.11
CDX1-201ENST00000231656 PPP3R2Q96LZ3 170 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 UHRF1Q96T88 793 aaPredicted RBP21.96■■□□□ 1.11
CDX1-201ENST00000231656 SLC39A3Q9BRY0 314 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 FARSBQ9NSD9 589 aaKnown RBP21.96■■□□□ 1.11
CDX1-201ENST00000231656 INVSQ9Y283 1065 aa21.96■■□□□ 1.11
CDX1-201ENST00000231656 ZDBF2Q9HCK1 2354 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 KCNE1BA0A087WTH5 132 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 FAM234BA2RU67 622 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 KRT87PA6NCN2 255 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 ARHGEF33A8MVX0 844 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 GPR89AB7ZAQ6 455 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 SLC28A1O00337 649 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 RGS14O43566 566 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 HOXC4P09017 264 aaPredicted RBP21.95■■□□□ 1.1
CDX1-201ENST00000231656 GPR89BP0CG08 455 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 IL12AP29459 219 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 PREPP48147 710 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 KCNK10P57789 538 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 MUM1Q2TAK8 710 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 SMU1Q2TAY7 513 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 GGTA1PQ4G0N0 100 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 EEF1AKMT2Q5JPI9 291 aaKnown RBP21.95■■□□□ 1.1
CDX1-201ENST00000231656 C11orf96Q7Z7L8 435 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 MINDY1Q8N5J2 469 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 LILRA3Q8N6C8 439 aaPredicted RBP21.95■■□□□ 1.1
CDX1-201ENST00000231656 TMEM145Q8NBT3 493 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 PROKR1Q8TCW9 393 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 TMEM159Q96B96 161 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 HOPXQ9BPY8 73 aaPredicted RBP21.95■■□□□ 1.1
CDX1-201ENST00000231656 ACTR8Q9H981 624 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.95■■□□□ 1.1
CDX1-201ENST00000231656 PRKAB1Q9Y478 270 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 USP34Q70CQ2 3546 aa21.95■■□□□ 1.1
CDX1-201ENST00000231656 CACNB4O00305 520 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 AXIN1O15169 862 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 NDUFS2O75306 463 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 ULK1O75385 1050 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 EEDO75530 441 aaKnown RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 POP7O75817 140 aaKnown RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 POLR2JP52435 117 aaKnown RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 SLC7A2P52569 658 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 ABRQ12979 859 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 TRIM25Q14258 630 aaKnown RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 RFTN2Q52LD8 501 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 SAMD4BQ5PRF9 694 aaKnown RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 PRMT9Q6P2P2 845 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 GCNT7Q6ZNI0 430 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.94■■□□□ 1.1
CDX1-201ENST00000231656 SLC22A15Q8IZD6 547 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 BHLHE22Q8NFJ8 381 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 ACTL8Q9H568 366 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 SPATA6Q9NWH7 488 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 ABCD2Q9UBJ2 740 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 ZNF490Q9ULM2 529 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 DMTF1Q9Y222 760 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 SLC17A4Q9Y2C5 497 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 HS3ST3A1Q9Y663 406 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 ABCA7Q8IZY2 2146 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 TTC28Q96AY4 2481 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 C17orf113A0A1B0GUU1 675 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 PRAMEF26H0Y7S4 382 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 ANKRD28O15084 1053 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 FUCA1P04066 466 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 CEACAM5P06731 702 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 RPSAP08865 295 aaKnown RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 G6PDP11413 515 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 TCN1P20061 433 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 PFN3P60673 137 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 TLR1Q15399 786 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 IL23RQ5VWK5 629 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 CYP20A1Q6UW02 462 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 LRRTM4Q86VH4 590 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 PPFIBP2Q8ND30 876 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 PYCR2Q96C36 320 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 DNAJC11Q9NVH1 559 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 GID8Q9NWU2 228 aa21.94■■□□□ 1.1
CDX1-201ENST00000231656 POLR3HQ9Y535 204 aaPredicted RBP21.94■■□□□ 1.1
CDX1-201ENST00000231656 CEP192Q8TEP8 1941 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 NUDT1P36639 197 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 KIAA1024LP59773 190 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 FOXM1Q08050 763 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 PLA2G4EQ3MJ16 856 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 ZFAND4Q86XD8 727 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 KBTBD2Q8IY47 623 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 L3MBTL4Q8NA19 623 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 OR2L2Q8NH16 312 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 VPS33AQ96AX1 596 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 NAF1Q96HR8 494 aaKnown RBP21.93■■□□□ 1.1
CDX1-201ENST00000231656 IL1RL2Q9HB29 575 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 ZNHIT2Q9UHR6 403 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 SLC22A14Q9Y267 594 aa21.93■■□□□ 1.1
CDX1-201ENST00000231656 A0A1W2PPC4 97 aa21.92■■□□□ 1.1
CDX1-201ENST00000231656 CCDC154A6NI56 674 aa21.92■■□□□ 1.1
CDX1-201ENST00000231656 KRT6AP02538 564 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms