RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ERVPABLB-1P60509 514 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 TBPL1P62380 186 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 CDC16Q13042 620 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 E2F2Q14209 437 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 FASTKQ14296 549 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 KIR2DS5Q14953 304 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 PRAMEF9Q5VWM5 478 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 CAPN13Q6MZZ7 669 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 GKN2Q86XP6 184 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 SYTL1Q8IYJ3 562 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 CLYBLQ8N0X4 340 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 SFRP1Q8N474 314 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 PPFIBP2Q8ND30 876 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 ZNF548Q8NEK5 533 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 OR52E1Q8NGJ3 308 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 OR2L8Q8NGY9 312 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 LMX1AQ8TE12 382 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 SETD7Q8WTS6 366 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 PIGKQ92643 395 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 NRTNQ99748 197 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 RAB11FIP5Q9BXF6 653 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 POT1Q9NUX5 634 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 GPRC5BQ9NZH0 403 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 LNPEPQ9UIQ6 1025 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 DCTN4Q9UJW0 460 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 ICKQ9UPZ9 632 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 SNX11Q9Y5W9 270 aa14.28□□□□□ -0.12
SHKBP1-211ENST00000595945 KCNE1BA0A087WTH5 132 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 A0A1W2PPV9 198 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 LMO7DNF2Z398 122 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 AQP9O43315 295 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 KATNA1O75449 491 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 OR4F21O95013 312 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 ENO1P06733 434 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 EBLN1P0CF75 366 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 NPPBP16860 134 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CCND1P24385 295 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CASP2P42575 452 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 RAB28P51157 221 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CCNG1P51959 295 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 AQP5P55064 265 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 FOXA1P55317 472 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 SF3A3Q12874 501 aaKnown RBP eCLIP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 SIM2Q14190 667 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 SHBQ15464 509 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 ZNF423Q2M1K9 1284 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 GGTA1PQ4G0N0 100 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 PRAMEF14Q5SWL7 426 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 FAM219BQ5XKK7 198 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 LETMD1Q6P1Q0 360 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 EPGNQ6UW88 154 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 LCTLQ6UWM7 567 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 C17orf82Q86X59 251 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CHCHD4Q8N4Q1 142 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 ANKS4BQ8N8V4 417 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 SNX31Q8N9S9 440 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 LMNTD1Q8N9Z9 388 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 L3MBTL4Q8NA19 623 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 LINC01555Q8NAE3 123 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CCDC197Q8NCU1 140 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 OR4F6Q8NGB9 312 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 AGR3Q8TD06 166 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 ZDHHC1Q8WTX9 485 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 PATE1Q8WXA2 126 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 SMPDL3AQ92484 453 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CXorf40BQ96DE9 158 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 MED8Q96G25 268 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 TMEM120AQ9BXJ8 343 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 NUSAP1Q9BXS6 441 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 STN1Q9H668 368 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 SLC40A1Q9NP59 571 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CCDC177Q9NQR7 707 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 TRPS1Q9UHF7 1281 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 ARL2BPQ9Y2Y0 163 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 CSNK1G3Q9Y6M4 447 aa14.27□□□□□ -0.13
SHKBP1-211ENST00000595945 RP1P56715 2156 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 A0A0G2JND7 137 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 PRR33A8MZF0 331 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 YY2O15391 372 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 PRICKLE3O43900 615 aaPredicted RBP14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 KDM1AO60341 852 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 UGDHO60701 494 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 JUNP05412 331 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 IDH3AP50213 366 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 ARFIP2P53365 341 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 INHBCP55103 352 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 TUBB3Q13509 450 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 DUOXA1Q1HG43 343 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 CLEC6AQ6EIG7 209 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 OGFOD3Q6PK18 319 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 RABEPKQ7Z6M1 372 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 MILR1Q7Z6M3 343 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 SFTPA2Q8IWL1 248 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 CACNA2D3Q8IZS8 1091 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 AFAP1L2Q8N4X5 818 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 RAB42Q8N4Z0 105 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 FAM46DQ8NEK8 389 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 SLC37A2Q8TED4 501 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 WDR34Q96EX3 536 aa14.26□□□□□ -0.13
SHKBP1-211ENST00000595945 CDK15Q96Q40 435 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms