RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CLNKQ7Z7G1 428 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 CAMK1GQ96NX5 476 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 ACTR8Q9H981 624 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 ZNF624Q9P2J8 865 aaPredicted RBP18.03■□□□□ 0.48
CLN3-206ENST00000360019 TRPS1Q9UHF7 1281 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 ZFP69BQ9UJL9 534 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 ARHGEF17Q96PE2 2063 aaPredicted RBP18.03■□□□□ 0.48
CLN3-206ENST00000360019 THADAQ6YHU6 1953 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 ATP6AP2A0A1C7CYW4 349 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 ATP6AP2O75787 350 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 CLDN9O95484 217 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 SERPINA6P08185 405 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 F3P13726 295 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 JUNDP17535 347 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 HTR6P50406 440 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 BLKP51451 505 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 WDR45BQ5MNZ6 344 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 ACAD11Q709F0 780 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 LPCAT2Q7L5N7 544 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 MYLK4Q86YV6 388 aaPredicted RBP18.02■□□□□ 0.48
CLN3-206ENST00000360019 DDIASQ8IXT1 998 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 C2orf73Q8N5S3 287 aaPredicted RBP18.02■□□□□ 0.48
CLN3-206ENST00000360019 CCDC28BQ9BUN5 200 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 LRRC61Q9BV99 259 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 GSDMCQ9BYG8 508 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 MVB12BQ9H7P6 319 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 SPATA7Q9P0W8 599 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 TAAR2Q9P1P5 351 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 ARMCX1Q9P291 453 aa18.02■□□□□ 0.48
CLN3-206ENST00000360019 APOBEC3BQ9UH17 382 aaKnown RBP18.02■□□□□ 0.48
CLN3-206ENST00000360019 KCNE1BA0A087WTH5 132 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 E7EQ34 232 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 WFS1O76024 890 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 UBOX5O94941 541 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 CSF2P04141 144 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 LINC00032P0C843 101 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 NME1P15531 152 aaKnown RBP18.02■□□□□ 0.47
CLN3-206ENST00000360019 NPPBP16860 134 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 NXPH1P58417 271 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 C1orf61Q13536 156 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 KRT33BQ14525 404 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 ARHGAP19Q14CB8 494 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 CYP2A13Q16696 494 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 SPRED3Q2MJR0 410 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 GGTA1PQ4G0N0 100 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 SPDYAQ5MJ70 313 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 L3MBTL4Q8NA19 623 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 LINC01555Q8NAE3 123 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 OR52E1Q8NGJ3 308 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 CCDC177Q9NQR7 707 aaPredicted RBP18.02■□□□□ 0.47
CLN3-206ENST00000360019 POLG2Q9UHN1 485 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 LNPEPQ9UIQ6 1025 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 SH2B3Q9UQQ2 575 aa18.02■□□□□ 0.47
CLN3-206ENST00000360019 FFAR3O14843 346 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 GPR42O15529 346 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 CHEK2O96017 543 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 CD22P20273 847 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 HMOX2P30519 316 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 CSNK1EP49674 416 aaKnown RBP18.01■□□□□ 0.47
CLN3-206ENST00000360019 CHIT1Q13231 466 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 TSTA3Q13630 321 aaPredicted RBP18.01■□□□□ 0.47
CLN3-206ENST00000360019 UBAP2LQ14157 1087 aaKnown RBP18.01■□□□□ 0.47
CLN3-206ENST00000360019 GALNTL6Q49A17 601 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 PRRT3Q5FWE3 981 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 XKR7Q5GH72 579 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 TMEM198Q66K66 360 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 NXNQ6DKJ4 435 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 SCIMPQ6UWF3 145 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 EFL1Q7Z2Z2 1120 aaKnown RBP18.01■□□□□ 0.47
CLN3-206ENST00000360019 DTWD2Q8NBA8 298 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 CEP70Q8NHQ1 597 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 ACTRT2Q8TDY3 377 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 GAB3Q8WWW8 586 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 NEIL2Q969S2 332 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 HBEGFQ99075 208 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 SAR1AQ9NR31 198 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 HEBP2Q9Y5Z4 205 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 FRYLO94915 3013 aa18.01■□□□□ 0.47
CLN3-206ENST00000360019 TRBV23OR9-2A0A075B6M9 112 aa18■□□□□ 0.47
CLN3-206ENST00000360019 BCAT2O15382 392 aaPredicted RBP18■□□□□ 0.47
CLN3-206ENST00000360019 CCDC22O60826 627 aa18■□□□□ 0.47
CLN3-206ENST00000360019 CTSEP14091 401 aa18■□□□□ 0.47
CLN3-206ENST00000360019 HSD17B2P37059 387 aa18■□□□□ 0.47
CLN3-206ENST00000360019 SLC19A1P41440 591 aa18■□□□□ 0.47
CLN3-206ENST00000360019 PCDH1Q08174 1060 aa18■□□□□ 0.47
CLN3-206ENST00000360019 ABRAXAS2Q15018 415 aa18■□□□□ 0.47
CLN3-206ENST00000360019 CPSF6Q16630 551 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-206ENST00000360019 METTL21CQ5VZV1 264 aa18■□□□□ 0.47
CLN3-206ENST00000360019 PMS2CLQ68D20 193 aa18■□□□□ 0.47
CLN3-206ENST00000360019 CCDC121Q6ZUS5 278 aa18■□□□□ 0.47
CLN3-206ENST00000360019 LARP4Q71RC2 724 aaKnown RBP eCLIP18■□□□□ 0.471e-6■□□□□ 8.2
CLN3-206ENST00000360019 CHCHD4Q8N4Q1 142 aa18■□□□□ 0.47
CLN3-206ENST00000360019 PATE1Q8WXA2 126 aa18■□□□□ 0.47
CLN3-206ENST00000360019 XKR8Q9H6D3 395 aa18■□□□□ 0.47
CLN3-206ENST00000360019 KIR3DX1Q9H7L2 352 aa18■□□□□ 0.47
CLN3-206ENST00000360019 AKTIPQ9H8T0 292 aa18■□□□□ 0.47
CLN3-206ENST00000360019 GPRC5BQ9NZH0 403 aa18■□□□□ 0.47
CLN3-206ENST00000360019 ICKQ9UPZ9 632 aa18■□□□□ 0.47
CLN3-206ENST00000360019 KCNE2Q9Y6J6 123 aa18■□□□□ 0.47
CLN3-206ENST00000360019 ATXN2Q99700 1313 aaKnown RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms