RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RHOUQ7L0Q8 258 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 CPNE9Q8IYJ1 553 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 MICU2Q8IYU8 434 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 DCBLD1Q8N8Z6 715 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 NT5C3BQ969T7 300 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 LRRC58Q96CX6 371 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 CDKN2AIPNLQ96HQ2 116 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 MAGEH1Q9H213 219 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ASB8Q9H765 288 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 GTF2IRD1Q9UHL9 959 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PCDHB9Q9Y5E1 797 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 CACNG2Q9Y698 323 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 MEIS3P2A8K0S8 358 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 CLDN11O75508 207 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 RECQL5O94762 991 aaPredicted RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 CLIC3O95833 236 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 MT-ND1P03886 318 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ATN1P54259 1190 aaPredicted RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 COPZ1P61923 177 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PURAQ00577 322 aaKnown RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 CHAF1BQ13112 559 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 DUSP4Q13115 394 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 DDX39BQ13838 428 aaKnown RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 UPP1Q16831 310 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 DGKKQ5KSL6 1271 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ZNF678Q5SXM1 525 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 C1orf185Q5T7R7 199 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 NIPAL1Q6NVV3 410 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PAQR9Q6ZVX9 377 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 MAVSQ7Z434 540 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ACVR1CQ8NER5 493 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 OR7D4Q8NG98 312 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 REXO5Q96IC2 774 aaKnown RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 PHIPQ8WWQ0 1821 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 EVPLQ92817 2033 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 A8MUA0 341 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PRMT5O14744 637 aaPredicted RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 FFAR3O14843 346 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 GPR42O15529 346 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PDPK1O15530 556 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ZNF12P17014 697 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 KCNA5P22460 613 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PIK3CGP48736 1102 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 RGS19P49795 217 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 RPL38P63173 70 aaKnown RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 MERTKQ12866 999 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 AP5B1Q2VPB7 878 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ETFRF1Q6IPR1 90 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 PACRGLQ8N7B6 248 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 TTC29Q8NA56 475 aaPredicted RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 TSPEARQ8WU66 669 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 TMEM68Q96MH6 324 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 C11orf84Q9BUA3 381 aaPredicted RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 TNKS2Q9H2K2 1166 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 CXorf21Q9HAI6 301 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ZFP14Q9HCL3 533 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 MIOSQ9NXC5 875 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 C3orf18Q9UK00 162 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ATXN7L1Q9ULK2 861 aaPredicted RBP10.22□□□□□ -0.77
LIG1-220ENST00000601091 KCTD3Q9Y597 815 aa10.22□□□□□ -0.77
LIG1-220ENST00000601091 ANKRD31Q8N7Z5 1873 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 AGRPO00253 132 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 KERAO60938 352 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 ASGR1P07306 291 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 THEGLP0DJG4 465 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 ARSAP15289 507 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 NR4A2P43354 598 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 CASP6P55212 293 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 RAB15P59190 212 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 BCL2L1Q07817 233 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 SSX2Q16385 188 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 TBRG1Q3YBR2 411 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 HES5Q5TA89 166 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 SPESP1Q6UW49 350 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 CHST15Q7LFX5 561 aaPredicted RBP10.21□□□□□ -0.77
LIG1-220ENST00000601091 ZMIZ2Q8NF64 920 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 OR2T12Q8NG77 320 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 ESAMQ96AP7 390 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 IMP4Q96G21 291 aaKnown RBP10.21□□□□□ -0.77
LIG1-220ENST00000601091 MEAF6Q9HAF1 191 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 HPF1Q9NWY4 346 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 RAI2Q9Y5P3 530 aa10.21□□□□□ -0.77
LIG1-220ENST00000601091 C12orf71A8MTZ7 269 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 SYN3O14994 580 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 OAZ2O95190 189 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 CST1P01037 141 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 TFAP2AP05549 437 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 NCK1P16333 377 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 RAD52P43351 418 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 ERVK-21P61565 698 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 DSG2Q14126 1118 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 LRIT3Q3SXY7 679 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 USP39Q53GS9 565 aaKnown RBP10.21□□□□□ -0.78
LIG1-220ENST00000601091 KCTD11Q693B1 232 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 GCNT7Q6ZNI0 430 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 DPPA2Q7Z7J5 298 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 CLEC14AQ86T13 490 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 FAM124AQ86V42 546 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 TMEM132CQ8N3T6 1108 aa10.21□□□□□ -0.78
LIG1-220ENST00000601091 ZDHHC4Q9NPG8 344 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms