RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KIF1BPQ96EK5 621 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 CARD11Q9BXL7 1154 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 CHCHD3Q9NX63 227 aaKnown RBP6.72□□□□□ -1.33
SCN1A-216ENST00000637968 VPS18Q9P253 973 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 ODF2LQ9ULJ1 636 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 PYCARDQ9ULZ3 195 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 CT47B1P0C2W7 299 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-216ENST00000637968 PNMA6AP0CW24 399 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-216ENST00000637968 SCP2P22307 547 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 PTGS1P23219 599 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 DYDC1Q8WWB3 177 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 RSRC1Q96IZ7 334 aaKnown RBP6.72□□□□□ -1.33
SCN1A-216ENST00000637968 NPC1L1Q9UHC9 1359 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 UACAQ9BZF9 1416 aa6.71□□□□□ -1.33
SCN1A-216ENST00000637968 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.71□□□□□ -1.33
SCN1A-216ENST00000637968 KLHL23Q8NBE8 558 aa6.71□□□□□ -1.33
SCN1A-216ENST00000637968 RAPGEF2Q9Y4G8 1499 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 GGT6Q6P531 493 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 RINLQ6ZS11 566 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 GAS2L2Q8NHY3 880 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 MIPOL1Q8TD10 442 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 ABCD1P33897 745 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 GSCP56915 257 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-216ENST00000637968 NFXL1Q6ZNB6 911 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 STK11IPQ8N1F8 1099 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 PRPF38AQ8NAV1 312 aaKnown RBP6.71□□□□□ -1.34
SCN1A-216ENST00000637968 ACRBPQ8NEB7 543 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 GAPVD1Q14C86 1478 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 CCDC18Q5T9S5 1454 aa6.71□□□□□ -1.34
SCN1A-216ENST00000637968 BECN2A8MW95 431 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 INPP5BP32019 993 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 PEX19P40855 299 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 CEP57Q86XR8 500 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 LRPPRCP42704 1394 aaKnown RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 GCFC2P16383 781 aaKnown RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 FAM69CQ0P6D2 419 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 MAP9Q49MG5 647 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 SRRTQ9BXP5 876 aaKnown RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 KDM2AQ9Y2K7 1162 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 ROCK1Q13464 1354 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 TUBB4AP04350 444 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 SNW1Q13573 536 aaKnown RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 SF3A1Q15459 793 aaKnown RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 ZNF692Q9BU19 519 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 PRDM2Q13029 1718 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 DHX8Q14562 1220 aaKnown RBP6.7□□□□□ -1.34
SCN1A-216ENST00000637968 MICALCLQ6ZW33 695 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 MORC1Q86VD1 984 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 CEP112Q8N8E3 955 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 LCMT1Q9UIC8 334 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 RUSC2Q8N2Y8 1516 aa6.7□□□□□ -1.34
SCN1A-216ENST00000637968 ANKRD36BQ8N2N9 1353 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 PLEKHG2Q9H7P9 1386 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 BCAR3O75815 825 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 LIG3P49916 1009 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 ADCY2Q08462 1091 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 NAA30Q147X3 362 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CABS1Q96KC9 395 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 TRMT1Q9NXH9 659 aaKnown RBP6.69□□□□□ -1.34
SCN1A-216ENST00000637968 ELP1O95163 1332 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 HMGXB3Q12766 1538 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 GOLGA6L7A0A1B0GV03 622 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 ENOX2Q16206 610 aaKnown RBP6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CLEC17AQ6ZS10 378 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 GBP3Q9H0R5 595 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 TPD52L2O43399 206 aaKnown RBP6.69□□□□□ -1.34
SCN1A-216ENST00000637968 RBM5P52756 815 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CORO7P57737 925 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 SETDB1Q15047 1291 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CCDC27Q2M243 656 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 MIEF2Q96C03 454 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 SAAL1Q96ER3 474 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 KIF2CQ99661 725 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 IFT140Q96RY7 1462 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 KINO60870 393 aaKnown RBP6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CLCN6P51797 869 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 MTA1Q13330 715 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CRYMQ14894 314 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 GPT2Q8TD30 523 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 STAG1Q8WVM7 1258 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 PSD3Q9NYI0 1048 aa6.69□□□□□ -1.34
SCN1A-216ENST00000637968 CDC45O75419 566 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 ERCC6LQ2NKX8 1250 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 MFSD4BQ5TF39 518 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 NAT10Q9H0A0 1025 aaKnown RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 SPAG9O60271 1321 aaKnown RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 DHX29Q7Z478 1369 aaKnown RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 CHUKO15111 745 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 URI1O94763 535 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 SNUPNO95149 360 aaKnown RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 ITPRIPQ8IWB1 547 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 RMI1Q9H9A7 625 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 USP47Q96K76 1375 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 PAX7P23759 505 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 MCM2P49736 904 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 MCM6Q14566 821 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 NOC3LQ8WTT2 800 aaKnown RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 SMARCC1Q92922 1105 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-216ENST00000637968 RUFY1Q96T51 708 aa6.68□□□□□ -1.34
SCN1A-216ENST00000637968 INCENPQ9NQS7 918 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms