RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 IFNL2Q8IZJ0 200 aa20.39■□□□□ 0.85
PNKP-218ENST00000625299 BCS1LQ9Y276 419 aa20.39■□□□□ 0.85
PNKP-218ENST00000625299 ATG3Q9NT62 314 aa20.38■□□□□ 0.85
PNKP-218ENST00000625299 KIF13BQ9NQT8 1826 aa20.38■□□□□ 0.85
PNKP-218ENST00000625299 KIAA1551Q9HCM1 1747 aa20.38■□□□□ 0.85
PNKP-218ENST00000625299 WASHC2AQ641Q2 1341 aa20.37■□□□□ 0.85
PNKP-218ENST00000625299 A0A0G2JLW4 131 aa20.37■□□□□ 0.85
PNKP-218ENST00000625299 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.37■□□□□ 0.85
PNKP-218ENST00000625299 TRAPPC3LQ5T215 181 aa20.36■□□□□ 0.85
PNKP-218ENST00000625299 RTCBQ9Y3I0 505 aaKnown RBP20.36■□□□□ 0.85
PNKP-218ENST00000625299 ARHGAP27Q6ZUM4 889 aa20.35■□□□□ 0.85
PNKP-218ENST00000625299 RBM42Q9BTD8 480 aaKnown RBP20.35■□□□□ 0.85
PNKP-218ENST00000625299 APLP1P51693 650 aa20.34■□□□□ 0.85
PNKP-218ENST00000625299 TGFB2P61812 414 aa20.34■□□□□ 0.85
PNKP-218ENST00000625299 C10orf71Q711Q0 1435 aa20.34■□□□□ 0.85
PNKP-218ENST00000625299 KDRP35968 1356 aa20.34■□□□□ 0.85
PNKP-218ENST00000625299 TNNT2P45379 298 aaPredicted RBP20.33■□□□□ 0.85
PNKP-218ENST00000625299 NLGN1Q8N2Q7 840 aa20.33■□□□□ 0.85
PNKP-218ENST00000625299 CCDC87Q9NVE4 849 aa20.33■□□□□ 0.85
PNKP-218ENST00000625299 C4AP0C0L4 1744 aa20.33■□□□□ 0.84
PNKP-218ENST00000625299 TOMM70O94826 608 aa20.32■□□□□ 0.84
PNKP-218ENST00000625299 FCHSD2O94868 740 aa20.32■□□□□ 0.84
PNKP-218ENST00000625299 DPEP1P16444 411 aa20.32■□□□□ 0.84
PNKP-218ENST00000625299 POLKQ9UBT6 870 aa20.32■□□□□ 0.84
PNKP-218ENST00000625299 COL5A3P25940 1745 aaPredicted RBP20.31■□□□□ 0.84
PNKP-218ENST00000625299 RFC4P35249 363 aa20.31■□□□□ 0.84
PNKP-218ENST00000625299 EIF4A2Q14240 407 aaKnown RBP20.31■□□□□ 0.84
PNKP-218ENST00000625299 ARHGEF1Q92888 912 aaKnown RBP20.31■□□□□ 0.84
PNKP-218ENST00000625299 SLC4A9Q96Q91 983 aa20.31■□□□□ 0.84
PNKP-218ENST00000625299 POLR3GLQ9BT43 218 aa20.31■□□□□ 0.84
PNKP-218ENST00000625299 NMRK2Q9NPI5 230 aa20.31■□□□□ 0.84
PNKP-218ENST00000625299 PARP3Q9Y6F1 533 aa20.3■□□□□ 0.84
PNKP-218ENST00000625299 BRCA1P38398 1863 aaKnown RBP20.29■□□□□ 0.84
PNKP-218ENST00000625299 GYS1P13807 737 aa20.29■□□□□ 0.84
PNKP-218ENST00000625299 ADRA2BP18089 450 aa20.28■□□□□ 0.84
PNKP-218ENST00000625299 ZNF831Q5JPB2 1677 aa20.28■□□□□ 0.84
PNKP-218ENST00000625299 CNTNAP4Q9C0A0 1308 aa20.27■□□□□ 0.84
PNKP-218ENST00000625299 ERVV-2B6SEH9 535 aa20.27■□□□□ 0.84
PNKP-218ENST00000625299 RPS6KA4O75676 772 aa20.26■□□□□ 0.83
PNKP-218ENST00000625299 HSP90AB1P08238 724 aaKnown RBP20.26■□□□□ 0.83
PNKP-218ENST00000625299 CABP4P57796 275 aa20.26■□□□□ 0.83
PNKP-218ENST00000625299 RC3H1Q5TC82 1133 aaKnown RBP20.26■□□□□ 0.83
PNKP-218ENST00000625299 C9orf131Q5VYM1 1079 aa20.26■□□□□ 0.83
PNKP-218ENST00000625299 C16orf71Q8IYS4 520 aaPredicted RBP20.26■□□□□ 0.83
PNKP-218ENST00000625299 DCAF5Q96JK2 942 aa20.26■□□□□ 0.83
PNKP-218ENST00000625299 MYH14Q7Z406 1995 aaKnown RBP20.26■□□□□ 0.83
PNKP-218ENST00000625299 ARFGEF1Q9Y6D6 1849 aa20.25■□□□□ 0.83
PNKP-218ENST00000625299 WDR90Q96KV7 1748 aa20.25■□□□□ 0.83
PNKP-218ENST00000625299 ZNF530Q6P9A1 599 aaPredicted RBP20.25■□□□□ 0.83
PNKP-218ENST00000625299 PTCD1O75127 700 aaKnown RBP20.24■□□□□ 0.83
PNKP-218ENST00000625299 PLEKHO1Q53GL0 409 aaPredicted RBP20.24■□□□□ 0.83
PNKP-218ENST00000625299 DNAJC5GQ8N7S2 189 aa20.24■□□□□ 0.83
PNKP-218ENST00000625299 KDM6AO15550 1401 aaPredicted RBP20.24■□□□□ 0.83
PNKP-218ENST00000625299 SRP68Q9UHB9 627 aaKnown RBP20.23■□□□□ 0.83
PNKP-218ENST00000625299 PLEKHG2Q9H7P9 1386 aa20.22■□□□□ 0.83
PNKP-218ENST00000625299 HTRA3P83110 453 aa20.22■□□□□ 0.83
PNKP-218ENST00000625299 PIM2Q9P1W9 311 aa20.22■□□□□ 0.83
PNKP-218ENST00000625299 KCPQ6ZWJ8 1503 aa20.22■□□□□ 0.83
PNKP-218ENST00000625299 KCNA3P22001 575 aa20.21■□□□□ 0.83
PNKP-218ENST00000625299 DALRD3Q5D0E6 543 aaKnown RBP20.21■□□□□ 0.83
PNKP-218ENST00000625299 RBM46Q8TBY0 533 aaKnown RBP20.21■□□□□ 0.83
PNKP-218ENST00000625299 CRKLP46109 303 aaKnown RBP20.2■□□□□ 0.82
PNKP-218ENST00000625299 MTHFSP49914 203 aa20.2■□□□□ 0.82
PNKP-218ENST00000625299 FKBP8Q14318 412 aa20.2■□□□□ 0.82
PNKP-218ENST00000625299 C1orf141Q5JVX7 400 aa20.2■□□□□ 0.82
PNKP-218ENST00000625299 RNF181Q9P0P0 153 aa20.2■□□□□ 0.82
PNKP-218ENST00000625299 DDR1Q08345 913 aa20.19■□□□□ 0.82
PNKP-218ENST00000625299 AMOTQ4VCS5 1084 aa20.19■□□□□ 0.82
PNKP-218ENST00000625299 KDM2BQ8NHM5 1336 aa20.19■□□□□ 0.82
PNKP-218ENST00000625299 TJP1Q07157 1748 aa20.19■□□□□ 0.82
PNKP-218ENST00000625299 CHRNA5P30532 468 aa20.18■□□□□ 0.82
PNKP-218ENST00000625299 AEBP1Q8IUX7 1158 aa20.18■□□□□ 0.82
PNKP-218ENST00000625299 USP42Q9H9J4 1324 aaKnown RBP20.18■□□□□ 0.82
PNKP-218ENST00000625299 NFATC2IPQ8NCF5 419 aa20.17■□□□□ 0.82
PNKP-218ENST00000625299 KLRG1Q96E93 195 aa20.16■□□□□ 0.82
PNKP-218ENST00000625299 RRAGCQ9HB90 399 aa20.16■□□□□ 0.82
PNKP-218ENST00000625299 FSTL1Q12841 308 aa20.15■□□□□ 0.82
PNKP-218ENST00000625299 TNRC6CQ9HCJ0 1690 aaKnown RBP20.15■□□□□ 0.82
PNKP-218ENST00000625299 SBF1O95248 1867 aa20.14■□□□□ 0.81
PNKP-218ENST00000625299 SULT6B1Q6IMI4 303 aa20.13■□□□□ 0.81
PNKP-218ENST00000625299 POLRMTO00411 1230 aaKnown RBP20.12■□□□□ 0.81
PNKP-218ENST00000625299 ZPR1O75312 459 aa20.12■□□□□ 0.81
PNKP-218ENST00000625299 RASSF7Q02833 373 aa20.12■□□□□ 0.81
PNKP-218ENST00000625299 USPL1Q5W0Q7 1092 aa20.12■□□□□ 0.81
PNKP-218ENST00000625299 PANK3Q9H999 370 aa20.12■□□□□ 0.81
PNKP-218ENST00000625299 SCN11AQ9UI33 1791 aa20.12■□□□□ 0.81
PNKP-218ENST00000625299 COL13A1Q5TAT6 717 aaPredicted RBP20.11■□□□□ 0.81
PNKP-218ENST00000625299 INTS5Q6P9B9 1019 aaKnown RBP20.11■□□□□ 0.81
PNKP-218ENST00000625299 DNAJC10Q8IXB1 793 aa20.11■□□□□ 0.81
PNKP-218ENST00000625299 ADAMTS7Q9UKP4 1686 aa20.1■□□□□ 0.81
PNKP-218ENST00000625299 CAPN15O75808 1086 aa20.1■□□□□ 0.81
PNKP-218ENST00000625299 MORC1Q86VD1 984 aa20.1■□□□□ 0.81
PNKP-218ENST00000625299 AFDNP55196 1824 aaKnown RBP20.09■□□□□ 0.81
PNKP-218ENST00000625299 SMC1BQ8NDV3 1235 aa20.09■□□□□ 0.81
PNKP-218ENST00000625299 TM4SF1P30408 202 aa20.08■□□□□ 0.81
PNKP-218ENST00000625299 JMYQ8N9B5 988 aa20.08■□□□□ 0.81
PNKP-218ENST00000625299 SOS1Q07889 1333 aaPredicted RBP20.07■□□□□ 0.8
PNKP-218ENST00000625299 PCNTO95613 3336 aa20.06■□□□□ 0.8
PNKP-218ENST00000625299 VIRMAQ69YN4 1812 aaKnown RBP20.06■□□□□ 0.8
PNKP-218ENST00000625299 TIAM2Q8IVF5 1701 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms