RNA–Protein interactions for RNA: ENST00000622209.4

PMPCA-212, Transcript of peptidase, mitochondrial processing alpha subunit, humanhuman

TSL 1 (best)

Gene PMPCA, Length 1,013 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCA-212ENST00000622209 ITGB4P16144 1822 aa28.5■■■□□ 2.15
PMPCA-212ENST00000622209 ZNF530Q6P9A1 599 aaPredicted RBP28.5■■■□□ 2.15
PMPCA-212ENST00000622209 YBX3P16989 372 aaKnown RBP eCLIP28.49■■■□□ 2.15
PMPCA-212ENST00000622209 DCAF5Q96JK2 942 aa28.49■■■□□ 2.15
PMPCA-212ENST00000622209 C4BP0C0L5 1744 aa28.49■■■□□ 2.15
PMPCA-212ENST00000622209 ERVV-2B6SEH9 535 aa28.48■■■□□ 2.15
PMPCA-212ENST00000622209 GNPATO15228 680 aa28.48■■■□□ 2.15
PMPCA-212ENST00000622209 HSP90AB1P08238 724 aaKnown RBP28.48■■■□□ 2.15
PMPCA-212ENST00000622209 SSFA2P28290 1259 aa28.48■■■□□ 2.15
PMPCA-212ENST00000622209 CNGB1Q14028 1251 aaPredicted RBP28.47■■■□□ 2.15
PMPCA-212ENST00000622209 AMOTQ4VCS5 1084 aa28.47■■■□□ 2.15
PMPCA-212ENST00000622209 RBM42Q9BTD8 480 aaKnown RBP28.47■■■□□ 2.15
PMPCA-212ENST00000622209 CD2APQ9Y5K6 639 aa28.47■■■□□ 2.15
PMPCA-212ENST00000622209 DDX10Q13206 875 aaKnown RBP28.46■■■□□ 2.15
PMPCA-212ENST00000622209 SULT6B1Q6IMI4 303 aa28.46■■■□□ 2.15
PMPCA-212ENST00000622209 MTHFSP49914 203 aa28.45■■■□□ 2.14
PMPCA-212ENST00000622209 CABP4P57796 275 aa28.45■■■□□ 2.14
PMPCA-212ENST00000622209 PLEKHG2Q9H7P9 1386 aa28.45■■■□□ 2.14
PMPCA-212ENST00000622209 TAF1LQ8IZX4 1826 aa28.44■■■□□ 2.14
PMPCA-212ENST00000622209 GRIN3BO60391 1043 aa28.43■■■□□ 2.14
PMPCA-212ENST00000622209 IL13P35225 146 aa28.43■■■□□ 2.14
PMPCA-212ENST00000622209 SLC4A9Q96Q91 983 aa28.43■■■□□ 2.14
PMPCA-212ENST00000622209 C1orf141Q5JVX7 400 aa28.42■■■□□ 2.14
PMPCA-212ENST00000622209 ZNF316A6NFI3 1004 aaPredicted RBP28.39■■■□□ 2.14
PMPCA-212ENST00000622209 KDM6AO15550 1401 aaPredicted RBP28.39■■■□□ 2.14
PMPCA-212ENST00000622209 RTCBQ9Y3I0 505 aaKnown RBP28.38■■■□□ 2.13
PMPCA-212ENST00000622209 KDRP35968 1356 aa28.37■■■□□ 2.13
PMPCA-212ENST00000622209 TRAPPC3LQ5T215 181 aa28.37■■■□□ 2.13
PMPCA-212ENST00000622209 NFATC2IPQ8NCF5 419 aa28.37■■■□□ 2.13
PMPCA-212ENST00000622209 WWC3Q9ULE0 1092 aa28.37■■■□□ 2.13
PMPCA-212ENST00000622209 PTCD1O75127 700 aaKnown RBP28.36■■■□□ 2.13
PMPCA-212ENST00000622209 UBR3Q6ZT12 1888 aa28.34■■■□□ 2.13
PMPCA-212ENST00000622209 CHD4Q14839 1912 aa28.34■■■□□ 2.13
PMPCA-212ENST00000622209 MMP10P09238 476 aa28.33■■■□□ 2.13
PMPCA-212ENST00000622209 PPP2R1AP30153 589 aa28.33■■■□□ 2.13
PMPCA-212ENST00000622209 RC3H1Q5TC82 1133 aaKnown RBP28.33■■■□□ 2.13
PMPCA-212ENST00000622209 ARHGEF1Q92888 912 aaKnown RBP28.33■■■□□ 2.13
PMPCA-212ENST00000622209 HMOX1P09601 288 aa28.32■■■□□ 2.12
PMPCA-212ENST00000622209 DIAPH1O60610 1272 aaKnown RBP28.31■■■□□ 2.12
PMPCA-212ENST00000622209 RPS6KA4O75676 772 aa28.3■■■□□ 2.12
PMPCA-212ENST00000622209 CNTNAP4Q9C0A0 1308 aa28.29■■■□□ 2.12
PMPCA-212ENST00000622209 RFC4P35249 363 aa28.29■■■□□ 2.12
PMPCA-212ENST00000622209 C1QTNF8P60827 252 aa28.29■■■□□ 2.12
PMPCA-212ENST00000622209 AKAP4Q5JQC9 854 aa28.29■■■□□ 2.12
PMPCA-212ENST00000622209 NLGN1Q8N2Q7 840 aa28.29■■■□□ 2.12
PMPCA-212ENST00000622209 CFAP53Q96M91 514 aa28.29■■■□□ 2.12
PMPCA-212ENST00000622209 RALBP1Q15311 655 aa28.28■■■□□ 2.12
PMPCA-212ENST00000622209 LGR6Q9HBX8 967 aa28.28■■■□□ 2.12
PMPCA-212ENST00000622209 ADRA2BP18089 450 aa28.27■■■□□ 2.12
PMPCA-212ENST00000622209 GIGYF1O75420 1035 aaPredicted RBP28.26■■■□□ 2.11
PMPCA-212ENST00000622209 GYS1P13807 737 aa28.25■■■□□ 2.11
PMPCA-212ENST00000622209 CRKLP46109 303 aaKnown RBP28.25■■■□□ 2.11
PMPCA-212ENST00000622209 COL3A1P02461 1466 aaPredicted RBP28.25■■■□□ 2.11
PMPCA-212ENST00000622209 SLC52A2Q9HAB3 445 aa28.23■■■□□ 2.11
PMPCA-212ENST00000622209 SENP3-EIF4A1A0A087X0R7 540 aa28.22■■■□□ 2.11
PMPCA-212ENST00000622209 RNMTO43148 476 aaKnown RBP28.22■■■□□ 2.11
PMPCA-212ENST00000622209 MTHFSDQ2M296 383 aaKnown RBP28.22■■■□□ 2.11
PMPCA-212ENST00000622209 SRP68Q9UHB9 627 aaKnown RBP28.21■■■□□ 2.11
PMPCA-212ENST00000622209 A0A0G2JLW4 131 aa28.2■■■□□ 2.1
PMPCA-212ENST00000622209 SLC39A6Q13433 755 aa28.2■■■□□ 2.1
PMPCA-212ENST00000622209 PARP3Q9Y6F1 533 aa28.2■■■□□ 2.1
PMPCA-212ENST00000622209 DNAJC10Q8IXB1 793 aa28.19■■■□□ 2.1
PMPCA-212ENST00000622209 NUDCQ9Y266 331 aa28.19■■■□□ 2.1
PMPCA-212ENST00000622209 ATP10DQ9P241 1426 aa28.18■■■□□ 2.1
PMPCA-212ENST00000622209 INTS5Q6P9B9 1019 aaKnown RBP28.18■■■□□ 2.1
PMPCA-212ENST00000622209 CCDC87Q9NVE4 849 aa28.18■■■□□ 2.1
PMPCA-212ENST00000622209 U2SURPO15042 1029 aaKnown RBP28.17■■■□□ 2.1
PMPCA-212ENST00000622209 TGFB2P61812 414 aa28.17■■■□□ 2.1
PMPCA-212ENST00000622209 ZNF831Q5JPB2 1677 aa28.16■■■□□ 2.1
PMPCA-212ENST00000622209 ZNF526Q8TF50 670 aaPredicted RBP28.16■■■□□ 2.1
PMPCA-212ENST00000622209 CICQ96RK0 1608 aaPredicted RBP28.15■■■□□ 2.1
PMPCA-212ENST00000622209 FKBP8Q14318 412 aa28.15■■■□□ 2.1
PMPCA-212ENST00000622209 PXDNLA1KZ92 1463 aa28.15■■■□□ 2.1
PMPCA-212ENST00000622209 DPEP1P16444 411 aa28.14■■■□□ 2.1
PMPCA-212ENST00000622209 BCS1LQ9Y276 419 aa28.14■■■□□ 2.1
PMPCA-212ENST00000622209 MYBBP1AQ9BQG0 1328 aaKnown RBP28.14■■■□□ 2.09
PMPCA-212ENST00000622209 COL5A3P25940 1745 aaPredicted RBP28.13■■■□□ 2.09
PMPCA-212ENST00000622209 PRKRIP1Q9H875 184 aaPredicted RBP28.13■■■□□ 2.09
PMPCA-212ENST00000622209 GPBP1L1Q9HC44 474 aaPredicted RBP28.13■■■□□ 2.09
PMPCA-212ENST00000622209 USP42Q9H9J4 1324 aaKnown RBP28.13■■■□□ 2.09
PMPCA-212ENST00000622209 C10orf71Q711Q0 1435 aa28.12■■■□□ 2.09
PMPCA-212ENST00000622209 CYP19A1P11511 503 aaPredicted RBP28.11■■■□□ 2.09
PMPCA-212ENST00000622209 MYH14Q7Z406 1995 aaKnown RBP28.1■■■□□ 2.09
PMPCA-212ENST00000622209 ZPR1O75312 459 aa28.09■■■□□ 2.09
PMPCA-212ENST00000622209 DDR1Q08345 913 aa28.09■■■□□ 2.09
PMPCA-212ENST00000622209 ADCY9O60503 1353 aa28.09■■■□□ 2.09
PMPCA-212ENST00000622209 FCHSD2O94868 740 aa28.08■■■□□ 2.09
PMPCA-212ENST00000622209 USPL1Q5W0Q7 1092 aa28.08■■■□□ 2.09
PMPCA-212ENST00000622209 SCN11AQ9UI33 1791 aa28.08■■■□□ 2.09
PMPCA-212ENST00000622209 U2AF1L5P0DN76 240 aaPredicted RBP28.07■■■□□ 2.08
PMPCA-212ENST00000622209 U2AF1Q01081 240 aaKnown RBP eCLIP28.07■■■□□ 2.08
PMPCA-212ENST00000622209 ARHGAP27Q6ZUM4 889 aa28.07■■■□□ 2.08
PMPCA-212ENST00000622209 SOS1Q07889 1333 aaPredicted RBP28.07■■■□□ 2.08
PMPCA-212ENST00000622209 MRC1P22897 1456 aa28.06■■■□□ 2.08
PMPCA-212ENST00000622209 TJP1Q07157 1748 aa28.06■■■□□ 2.08
PMPCA-212ENST00000622209 C4AP0C0L4 1744 aa28.05■■■□□ 2.08
PMPCA-212ENST00000622209 KCNA3P22001 575 aa28.05■■■□□ 2.08
PMPCA-212ENST00000622209 TM4SF1P30408 202 aa28.05■■■□□ 2.08
PMPCA-212ENST00000622209 IL17REQ8NFR9 667 aa28.05■■■□□ 2.08
PMPCA-212ENST00000622209 GAS2L2Q8NHY3 880 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms