RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 A0A1W2PRG0 241 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 CAVIN2O95810 425 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 ATP2B1P20020 1258 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 APAF1O14727 1248 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 DDX12PQ92771 950 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 PPFIBP2Q8ND30 876 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 IFT74Q96LB3 600 aa17.4■□□□□ 0.38
COL5A1-208ENST00000618395 SPATS2LQ9NUQ6 558 aaKnown RBP17.4■□□□□ 0.38
COL5A1-208ENST00000618395 IGSF3O75054 1194 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 AKNAQ7Z591 1439 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 RAB3IL1Q8TBN0 382 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 VCX3BQ9H321 246 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 TSNAXIP1Q2TAA8 658 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 GCC1Q96CN9 775 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 HOMER2Q9NSB8 354 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 PLEKHH1Q9ULM0 1364 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 STMN2Q93045 179 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 TMX1Q9H3N1 280 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 PDZRN3Q9UPQ7 1066 aa17.39■□□□□ 0.37
COL5A1-208ENST00000618395 RPUSD2Q8IZ73 545 aaKnown RBP17.38■□□□□ 0.37
COL5A1-208ENST00000618395 NUP88Q99567 741 aaPredicted RBP17.38■□□□□ 0.37
COL5A1-208ENST00000618395 PANK3Q9H999 370 aa17.38■□□□□ 0.37
COL5A1-208ENST00000618395 GTF2E1P29083 439 aaPredicted RBP17.38■□□□□ 0.37
COL5A1-208ENST00000618395 CPLX4Q7Z7G2 160 aa17.38■□□□□ 0.37
COL5A1-208ENST00000618395 TUBB4AP04350 444 aa17.38■□□□□ 0.37
COL5A1-208ENST00000618395 VPS37DQ86XT2 251 aa17.38■□□□□ 0.37
COL5A1-208ENST00000618395 JADE2Q9NQC1 790 aa17.38■□□□□ 0.37
COL5A1-208ENST00000618395 SLU7O95391 586 aaKnown RBP17.37■□□□□ 0.37
COL5A1-208ENST00000618395 ANAPC4Q9UJX5 808 aa17.37■□□□□ 0.37
COL5A1-208ENST00000618395 PPP6R1Q9UPN7 881 aa17.37■□□□□ 0.37
COL5A1-208ENST00000618395 CCDC12Q8WUD4 166 aaPredicted RBP17.37■□□□□ 0.37
COL5A1-208ENST00000618395 GOLGA1Q92805 767 aa17.37■□□□□ 0.37
COL5A1-208ENST00000618395 INPP5BP32019 993 aa17.37■□□□□ 0.37
COL5A1-208ENST00000618395 PIP4K2BP78356 416 aa17.37■□□□□ 0.37
COL5A1-208ENST00000618395 PPP1R12CQ9BZL4 782 aa17.37■□□□□ 0.37
COL5A1-208ENST00000618395 TSPYL2Q9H2G4 693 aaPredicted RBP17.37■□□□□ 0.37
COL5A1-208ENST00000618395 A6NNZ2 444 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 TUBB8Q3ZCM7 444 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 GRIPAP1Q4V328 841 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 SREK1Q8WXA9 508 aaKnown RBP17.36■□□□□ 0.37
COL5A1-208ENST00000618395 ZKSCAN5Q9Y2L8 839 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 MAP3K9P80192 1104 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 CTAGE6Q86UF2 777 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 TRIM22Q8IYM9 498 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 ZEB2O60315 1214 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 GNG11P61952 73 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 FAM76AQ8TAV0 307 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 RLBP1P12271 317 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 FKBP15Q5T1M5 1219 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 KLHL10Q6JEL2 608 aa17.36■□□□□ 0.37
COL5A1-208ENST00000618395 ZBTB16Q05516 673 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 MAP7Q14244 749 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 CCDC97Q96F63 343 aaPredicted RBP17.35■□□□□ 0.37
COL5A1-208ENST00000618395 USH1CQ9Y6N9 552 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 WWC2Q6AWC2 1192 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 PPP1R14CQ8TAE6 165 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 SCAND2PQ9GZW5 306 aaPredicted RBP17.35■□□□□ 0.37
COL5A1-208ENST00000618395 YEATS4O95619 227 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 TUBBP07437 444 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 HDXQ7Z353 690 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 CASQ2O14958 399 aaPredicted RBP17.35■□□□□ 0.37
COL5A1-208ENST00000618395 POTEJP0CG39 1038 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 ARHGAP25P42331 645 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 L3MBTL2Q969R5 705 aa17.35■□□□□ 0.37
COL5A1-208ENST00000618395 DDX58O95786 925 aaKnown RBP17.34■□□□□ 0.37
COL5A1-208ENST00000618395 SAMD15Q9P1V8 674 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 WHAMMQ8TF30 809 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 PDE3AQ14432 1141 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 WASHC4Q2M389 1173 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 CFAP58Q5T655 872 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 FSD1Q9BTV5 496 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 STX1AQ16623 288 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 CTCFLQ8NI51 663 aaPredicted RBP17.34■□□□□ 0.37
COL5A1-208ENST00000618395 CDKL5O76039 1030 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 IKBKGQ9Y6K9 419 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 CTAGE9A4FU28 777 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 SSBP05455 408 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL5A1-208ENST00000618395 AIMP1Q12904 312 aaKnown RBP17.34■□□□□ 0.37
COL5A1-208ENST00000618395 LARP1Q6PKG0 1096 aaKnown RBP17.34■□□□□ 0.37
COL5A1-208ENST00000618395 CACNA2D4Q7Z3S7 1137 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 TMC6Q7Z403 805 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 ZSCAN31Q96LW9 406 aaPredicted RBP17.34■□□□□ 0.37
COL5A1-208ENST00000618395 ZSWIM4Q9H7M6 989 aa17.34■□□□□ 0.37
COL5A1-208ENST00000618395 RUNDC1Q96C34 613 aa17.33■□□□□ 0.37
COL5A1-208ENST00000618395 DDX27Q96GQ7 796 aaKnown RBP17.33■□□□□ 0.37
COL5A1-208ENST00000618395 USP47Q96K76 1375 aa17.33■□□□□ 0.37
COL5A1-208ENST00000618395 STMN1P16949 149 aa17.33■□□□□ 0.36
COL5A1-208ENST00000618395 CCDC129Q6ZRS4 1044 aa17.33■□□□□ 0.36
COL5A1-208ENST00000618395 CCDC110Q8TBZ0 833 aa17.33■□□□□ 0.36
COL5A1-208ENST00000618395 FKBP5Q13451 457 aaPredicted RBP17.33■□□□□ 0.36
COL5A1-208ENST00000618395 MKRN1Q9UHC7 482 aaKnown RBP17.32■□□□□ 0.36
COL5A1-208ENST00000618395 PFDN1O60925 122 aa17.32■□□□□ 0.36
COL5A1-208ENST00000618395 CCDC38Q502W7 563 aa17.32■□□□□ 0.36
COL5A1-208ENST00000618395 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.32■□□□□ 0.36
COL5A1-208ENST00000618395 TNPO1Q92973 898 aaKnown RBP17.32■□□□□ 0.36
COL5A1-208ENST00000618395 TRIM7Q9C029 511 aa17.32■□□□□ 0.36
COL5A1-208ENST00000618395 MIER3Q7Z3K6 550 aa17.32■□□□□ 0.36
COL5A1-208ENST00000618395 STK3Q13188 491 aa17.32■□□□□ 0.36
COL5A1-208ENST00000618395 CCDC172P0C7W6 258 aa17.31■□□□□ 0.36
COL5A1-208ENST00000618395 AMPHP49418 695 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms