RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 C8orf58Q8NAV2 365 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 MINDY4BA8MYZ0 360 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 SLC4A8Q2Y0W8 1093 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 HYPKQ9NX55 129 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 IFIT1P09914 478 aaKnown RBP12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 IL2RBP14784 551 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 RPGRQ92834 1020 aaKnown RBP12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 KIF1BPQ96EK5 621 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 ANKRD13DQ6ZTN6 518 aa12.13□□□□□ -0.47
SMARCA1-205ENST00000617310 FIBPO43427 364 aa12.13□□□□□ -0.47
SMARCA1-205ENST00000617310 A0A1W2PP64 1363 aa12.13□□□□□ -0.47
SMARCA1-205ENST00000617310 ABCC11Q96J66 1382 aa12.13□□□□□ -0.47
SMARCA1-205ENST00000617310 SLC3A2P08195 630 aaKnown RBP12.13□□□□□ -0.47
SMARCA1-205ENST00000617310 AIDAQ96BJ3 306 aa12.13□□□□□ -0.47
SMARCA1-205ENST00000617310 NBPF6Q5VWK0 638 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 NBPF5PQ86XG9 351 aaPredicted RBP12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 NOC3LQ8WTT2 800 aaKnown RBP12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 NBPF4Q96M43 638 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 HIP1O00291 1037 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 CCDC82Q8N4S0 544 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 UHRF1BP1Q6BDS2 1440 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 CHD1O14646 1710 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 JAKMIP1Q96N16 626 aaKnown RBP12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 MEIS3Q99687 375 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 YTHDC2Q9H6S0 1430 aaKnown RBP12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 SLAIN2Q9P270 581 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 ATP10AO60312 1499 aa12.12□□□□□ -0.47
SMARCA1-205ENST00000617310 MX1P20591 662 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 TSPYL6Q8N831 410 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 PCMTD1Q96MG8 357 aaPredicted RBP12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 CCDC73Q6ZRK6 1079 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 SDF4Q9BRK5 362 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 TNNQ9UQP3 1299 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 CAVIN4Q5BKX8 364 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 PPP1R42Q7Z4L9 355 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 CYP46A1Q9Y6A2 500 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 ANKRD18BA2A2Z9 1011 aa12.11□□□□□ -0.47
SMARCA1-205ENST00000617310 ALDH1L2Q3SY69 923 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 BLOC1S2Q6QNY1 142 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 RNF214Q8ND24 703 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 NPATQ14207 1427 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 MAPKBP1O60336 1514 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 FAM98CQ17RN3 349 aaKnown RBP12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 HSP90AB3PQ58FF7 597 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 CWC25Q9NXE8 425 aaPredicted RBP12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 PPFIA3O75145 1194 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 LARP6Q9BRS8 491 aaKnown RBP12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 NSD2O96028 1365 aa12.1□□□□□ -0.47
SMARCA1-205ENST00000617310 XBP1P17861 261 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 HOXC9P31274 260 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 NUCB2P80303 420 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 DZIP1Q86YF9 867 aaKnown RBP12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 SIRT1Q96EB6 747 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 TFCP2L1Q9NZI6 479 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 FLT4P35916 1363 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 DDX11Q96FC9 970 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 UBAC1Q9BSL1 405 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 MPHOSPH10O00566 681 aaKnown RBP12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 BRMS1Q9HCU9 246 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 TMOD2Q9NZR1 351 aa12.09□□□□□ -0.47
SMARCA1-205ENST00000617310 GLRX3O76003 335 aaKnown RBP12.08□□□□□ -0.47
SMARCA1-205ENST00000617310 USP5P45974 858 aa12.08□□□□□ -0.47
SMARCA1-205ENST00000617310 NIP7Q9Y221 180 aaKnown RBP eCLIP12.08□□□□□ -0.47
SMARCA1-205ENST00000617310 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.08□□□□□ -0.47
SMARCA1-205ENST00000617310 DDX46Q7L014 1031 aaKnown RBP12.08□□□□□ -0.48
SMARCA1-205ENST00000617310 GOLIM4O00461 696 aa12.08□□□□□ -0.48
SMARCA1-205ENST00000617310 CWF19L2Q2TBE0 894 aaKnown RBP12.08□□□□□ -0.48
SMARCA1-205ENST00000617310 AKAP4Q5JQC9 854 aa12.08□□□□□ -0.48
SMARCA1-205ENST00000617310 LMBR1LQ6UX01 489 aa12.08□□□□□ -0.48
SMARCA1-205ENST00000617310 HELBQ8NG08 1087 aaPredicted RBP12.08□□□□□ -0.48
SMARCA1-205ENST00000617310 ZSCAN25Q6NSZ9 544 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 PRPF40BQ6NWY9 871 aaKnown RBP12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 CCDC24Q8N4L8 307 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 TEX13AQ9BXU3 409 aaPredicted RBP12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 ITSN2Q9NZM3 1697 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 CCDC69A6NI79 296 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 RABEP1Q15276 862 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 AKAP2Q9Y2D5 859 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 POLR3DP05423 398 aaPredicted RBP12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 FERMT3Q86UX7 667 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 CEP89Q96ST8 783 aa12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 NKTRP30414 1462 aaKnown RBP12.07□□□□□ -0.48
SMARCA1-205ENST00000617310 F8W031 263 aaPredicted RBP12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 CRACR2BQ8N4Y2 399 aaPredicted RBP12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 CCDC47Q96A33 483 aaKnown RBP12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 ATP7AQ04656 1500 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 RALGAPBQ86X10 1494 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 TPM3P06753 285 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 PAXIP1Q6ZW49 1069 aaPredicted RBP12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 IP6K1Q92551 441 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 SETDB2Q96T68 719 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 PZPP20742 1482 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 NAPBQ9H115 298 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 PA2G4Q9UQ80 394 aaKnown RBP12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 PLEKHH1Q9ULM0 1364 aa12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 TSR1Q2NL82 804 aaKnown RBP12.06□□□□□ -0.48
SMARCA1-205ENST00000617310 TCOF1Q13428 1488 aaKnown RBP12.05□□□□□ -0.48
SMARCA1-205ENST00000617310 TMEM2Q9UHN6 1383 aa12.05□□□□□ -0.48
SMARCA1-205ENST00000617310 HAND2P61296 217 aa12.05□□□□□ -0.48
SMARCA1-205ENST00000617310 TRIM22Q8IYM9 498 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms