RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 C5P01031 1676 aa10.4□□□□□ -0.74
CUX1-219ENST00000606749 TAF1LQ8IZX4 1826 aa10.4□□□□□ -0.75
CUX1-219ENST00000606749 PHF14O94880 888 aa10.39□□□□□ -0.75
CUX1-219ENST00000606749 SSFA2P28290 1259 aa10.39□□□□□ -0.75
CUX1-219ENST00000606749 SULT6B1Q6IMI4 303 aa10.39□□□□□ -0.75
CUX1-219ENST00000606749 ZNF530Q6P9A1 599 aaPredicted RBP10.39□□□□□ -0.75
CUX1-219ENST00000606749 PELP1Q8IZL8 1130 aaKnown RBP10.39□□□□□ -0.75
CUX1-219ENST00000606749 C4BP0C0L5 1744 aa10.38□□□□□ -0.75
CUX1-219ENST00000606749 MTHFSP49914 203 aa10.38□□□□□ -0.75
CUX1-219ENST00000606749 CABP4P57796 275 aa10.38□□□□□ -0.75
CUX1-219ENST00000606749 SLC4A9Q96Q91 983 aa10.38□□□□□ -0.75
CUX1-219ENST00000606749 CD2APQ9Y5K6 639 aa10.38□□□□□ -0.75
CUX1-219ENST00000606749 GNPATO15228 680 aa10.37□□□□□ -0.75
CUX1-219ENST00000606749 YBX3P16989 372 aaKnown RBP eCLIP10.37□□□□□ -0.75
CUX1-219ENST00000606749 C1orf141Q5JVX7 400 aa10.37□□□□□ -0.75
CUX1-219ENST00000606749 RBM42Q9BTD8 480 aaKnown RBP10.37□□□□□ -0.75
CUX1-219ENST00000606749 GOLGB1Q14789 3259 aaKnown RBP10.36□□□□□ -0.75
CUX1-219ENST00000606749 GRIN3BO60391 1043 aa10.36□□□□□ -0.75
CUX1-219ENST00000606749 CC2D1BQ5T0F9 858 aaKnown RBP10.36□□□□□ -0.75
CUX1-219ENST00000606749 RC3H1Q5TC82 1133 aaKnown RBP10.36□□□□□ -0.75
CUX1-219ENST00000606749 NFATC2IPQ8NCF5 419 aa10.36□□□□□ -0.75
CUX1-219ENST00000606749 KDRP35968 1356 aa10.36□□□□□ -0.75
CUX1-219ENST00000606749 CHD4Q14839 1912 aa10.35□□□□□ -0.75
CUX1-219ENST00000606749 KDM6AO15550 1401 aaPredicted RBP10.35□□□□□ -0.75
CUX1-219ENST00000606749 TRAPPC3LQ5T215 181 aa10.35□□□□□ -0.75
CUX1-219ENST00000606749 RTCBQ9Y3I0 505 aaKnown RBP10.35□□□□□ -0.75
CUX1-219ENST00000606749 UBR3Q6ZT12 1888 aa10.35□□□□□ -0.75
CUX1-219ENST00000606749 PTCD1O75127 700 aaKnown RBP10.34□□□□□ -0.75
CUX1-219ENST00000606749 RPS6KA4O75676 772 aa10.34□□□□□ -0.75
CUX1-219ENST00000606749 AKAP4Q5JQC9 854 aa10.34□□□□□ -0.75
CUX1-219ENST00000606749 ARHGEF1Q92888 912 aaKnown RBP10.34□□□□□ -0.75
CUX1-219ENST00000606749 LGR6Q9HBX8 967 aa10.34□□□□□ -0.75
CUX1-219ENST00000606749 DIAPH1O60610 1272 aaKnown RBP10.33□□□□□ -0.76
CUX1-219ENST00000606749 HMOX1P09601 288 aa10.33□□□□□ -0.76
CUX1-219ENST00000606749 NLGN1Q8N2Q7 840 aa10.33□□□□□ -0.76
CUX1-219ENST00000606749 CNTNAP4Q9C0A0 1308 aa10.33□□□□□ -0.76
CUX1-219ENST00000606749 MMP10P09238 476 aa10.32□□□□□ -0.76
CUX1-219ENST00000606749 ADRA2BP18089 450 aa10.32□□□□□ -0.76
CUX1-219ENST00000606749 RFC4P35249 363 aa10.32□□□□□ -0.76
CUX1-219ENST00000606749 NPC1L1Q9UHC9 1359 aa10.31□□□□□ -0.76
CUX1-219ENST00000606749 RNMTO43148 476 aaKnown RBP10.31□□□□□ -0.76
CUX1-219ENST00000606749 CRKLP46109 303 aaKnown RBP10.31□□□□□ -0.76
CUX1-219ENST00000606749 MTHFSDQ2M296 383 aaKnown RBP10.31□□□□□ -0.76
CUX1-219ENST00000606749 SLC52A2Q9HAB3 445 aa10.31□□□□□ -0.76
CUX1-219ENST00000606749 ZNF831Q5JPB2 1677 aa10.31□□□□□ -0.76
CUX1-219ENST00000606749 GYS1P13807 737 aa10.3□□□□□ -0.76
CUX1-219ENST00000606749 CNGB1Q14028 1251 aaPredicted RBP10.3□□□□□ -0.76
CUX1-219ENST00000606749 C1QTNF8P60827 252 aa10.29□□□□□ -0.76
CUX1-219ENST00000606749 SLC39A6Q13433 755 aa10.29□□□□□ -0.76
CUX1-219ENST00000606749 INTS5Q6P9B9 1019 aaKnown RBP10.29□□□□□ -0.76
CUX1-219ENST00000606749 WWC3Q9ULE0 1092 aa10.29□□□□□ -0.76
CUX1-219ENST00000606749 MYH14Q7Z406 1995 aaKnown RBP10.28□□□□□ -0.76
CUX1-219ENST00000606749 TGFB2P61812 414 aa10.28□□□□□ -0.76
CUX1-219ENST00000606749 DNAJC10Q8IXB1 793 aa10.28□□□□□ -0.76
CUX1-219ENST00000606749 SCN11AQ9UI33 1791 aa10.27□□□□□ -0.77
CUX1-219ENST00000606749 A0A0G2JLW4 131 aa10.27□□□□□ -0.77
CUX1-219ENST00000606749 U2SURPO15042 1029 aaKnown RBP10.27□□□□□ -0.77
CUX1-219ENST00000606749 CYP19A1P11511 503 aaPredicted RBP10.27□□□□□ -0.77
CUX1-219ENST00000606749 CCDC87Q9NVE4 849 aa10.27□□□□□ -0.77
CUX1-219ENST00000606749 SRP68Q9UHB9 627 aaKnown RBP10.27□□□□□ -0.77
CUX1-219ENST00000606749 PARP3Q9Y6F1 533 aa10.27□□□□□ -0.77
CUX1-219ENST00000606749 COL5A3P25940 1745 aaPredicted RBP10.27□□□□□ -0.77
CUX1-219ENST00000606749 GIGYF1O75420 1035 aaPredicted RBP10.26□□□□□ -0.77
CUX1-219ENST00000606749 FKBP8Q14318 412 aa10.26□□□□□ -0.77
CUX1-219ENST00000606749 IL17REQ8NFR9 667 aa10.26□□□□□ -0.77
CUX1-219ENST00000606749 USP42Q9H9J4 1324 aaKnown RBP10.26□□□□□ -0.77
CUX1-219ENST00000606749 GNAT3A8MTJ3 354 aa10.25□□□□□ -0.77
CUX1-219ENST00000606749 DPEP1P16444 411 aa10.25□□□□□ -0.77
CUX1-219ENST00000606749 KCNA3P22001 575 aa10.25□□□□□ -0.77
CUX1-219ENST00000606749 TM4SF1P30408 202 aa10.25□□□□□ -0.77
CUX1-219ENST00000606749 VSIG10Q8N0Z9 540 aa10.25□□□□□ -0.77
CUX1-219ENST00000606749 GAS2L2Q8NHY3 880 aa10.25□□□□□ -0.77
CUX1-219ENST00000606749 PXDNLA1KZ92 1463 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 COL3A1P02461 1466 aaPredicted RBP10.24□□□□□ -0.77
CUX1-219ENST00000606749 ZPR1O75312 459 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 DDR1Q08345 913 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 USPL1Q5W0Q7 1092 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 PHACTR3Q96KR7 559 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 CFAP53Q96M91 514 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 BCS1LQ9Y276 419 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 CICQ96RK0 1608 aaPredicted RBP10.24□□□□□ -0.77
CUX1-219ENST00000606749 SOS1Q07889 1333 aaPredicted RBP10.24□□□□□ -0.77
CUX1-219ENST00000606749 C10orf71Q711Q0 1435 aa10.24□□□□□ -0.77
CUX1-219ENST00000606749 MRC1P22897 1456 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 SENP3-EIF4A1A0A087X0R7 540 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 POLRMTO00411 1230 aaKnown RBP10.23□□□□□ -0.77
CUX1-219ENST00000606749 PPP2R1AP30153 589 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 TEFQ10587 303 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 ZNF790Q6PG37 636 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 GPBP1L1Q9HC44 474 aaPredicted RBP10.23□□□□□ -0.77
CUX1-219ENST00000606749 NARFQ9UHQ1 456 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 ZBTB1Q9Y2K1 713 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 TJP1Q07157 1748 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 KIF13BQ9NQT8 1826 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 ATP10DQ9P241 1426 aa10.23□□□□□ -0.77
CUX1-219ENST00000606749 FCHSD2O94868 740 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 STARD3NLO95772 234 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 PRKAR2BP31323 418 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 ARHGAP27Q6ZUM4 889 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 TTC5Q8N0Z6 440 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms