RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 IGSF1Q8N6C5 1336 aa24.43■■□□□ 1.5
SHKBP1-227ENST00000602011 PLEKHO1Q53GL0 409 aaPredicted RBP24.43■■□□□ 1.5
SHKBP1-227ENST00000602011 MAP2P11137 1827 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-227ENST00000602011 ANKRD26Q9UPS8 1709 aa24.42■■□□□ 1.5
SHKBP1-227ENST00000602011 ATP6V1AP38606 617 aa24.42■■□□□ 1.5
SHKBP1-227ENST00000602011 DCAF5Q96JK2 942 aa24.42■■□□□ 1.5
SHKBP1-227ENST00000602011 ASAP1Q9ULH1 1129 aa24.42■■□□□ 1.5
SHKBP1-227ENST00000602011 TNNT2P45379 298 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-227ENST00000602011 ITPK1Q13572 414 aa24.41■■□□□ 1.5
SHKBP1-227ENST00000602011 GPBP1L1Q9HC44 474 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-227ENST00000602011 HSPA5P11021 654 aaKnown RBP24.4■■□□□ 1.5
SHKBP1-227ENST00000602011 ATG3Q9NT62 314 aa24.4■■□□□ 1.5
SHKBP1-227ENST00000602011 ADCY9O60503 1353 aa24.4■■□□□ 1.5
SHKBP1-227ENST00000602011 GNPATO15228 680 aa24.38■■□□□ 1.49
SHKBP1-227ENST00000602011 RC3H1Q5TC82 1133 aaKnown RBP24.37■■□□□ 1.49
SHKBP1-227ENST00000602011 MORC1Q86VD1 984 aa24.37■■□□□ 1.49
SHKBP1-227ENST00000602011 ADRA2BP18089 450 aa24.36■■□□□ 1.49
SHKBP1-227ENST00000602011 KNSTRNQ9Y448 316 aa24.36■■□□□ 1.49
SHKBP1-227ENST00000602011 TRAPPC3LQ5T215 181 aa24.35■■□□□ 1.49
SHKBP1-227ENST00000602011 NLGN1Q8N2Q7 840 aa24.35■■□□□ 1.49
SHKBP1-227ENST00000602011 RTCBQ9Y3I0 505 aaKnown RBP24.35■■□□□ 1.49
SHKBP1-227ENST00000602011 MMP10P09238 476 aa24.32■■□□□ 1.48
SHKBP1-227ENST00000602011 CABP4P57796 275 aa24.32■■□□□ 1.48
SHKBP1-227ENST00000602011 C1orf141Q5JVX7 400 aa24.32■■□□□ 1.48
SHKBP1-227ENST00000602011 CCER1Q8TC90 406 aaPredicted RBP24.32■■□□□ 1.48
SHKBP1-227ENST00000602011 MTHFSP49914 203 aa24.31■■□□□ 1.48
SHKBP1-227ENST00000602011 ZNF530Q6P9A1 599 aaPredicted RBP24.31■■□□□ 1.48
SHKBP1-227ENST00000602011 SLC4A9Q96Q91 983 aa24.3■■□□□ 1.48
SHKBP1-227ENST00000602011 RBM42Q9BTD8 480 aaKnown RBP24.3■■□□□ 1.48
SHKBP1-227ENST00000602011 IFFO2Q5TF58 517 aa24.29■■□□□ 1.48
SHKBP1-227ENST00000602011 CNTNAP4Q9C0A0 1308 aa24.29■■□□□ 1.48
SHKBP1-227ENST00000602011 RPS6KA4O75676 772 aa24.28■■□□□ 1.48
SHKBP1-227ENST00000602011 HSPA6P17066 643 aa24.28■■□□□ 1.48
SHKBP1-227ENST00000602011 TGFB2P61812 414 aa24.28■■□□□ 1.48
SHKBP1-227ENST00000602011 PXDNLA1KZ92 1463 aa24.27■■□□□ 1.48
SHKBP1-227ENST00000602011 CICQ96RK0 1608 aaPredicted RBP24.27■■□□□ 1.48
SHKBP1-227ENST00000602011 KDRP35968 1356 aa24.27■■□□□ 1.48
SHKBP1-227ENST00000602011 N4BP2Q86UW6 1770 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-227ENST00000602011 RFC4P35249 363 aa24.26■■□□□ 1.47
SHKBP1-227ENST00000602011 SULT6B1Q6IMI4 303 aa24.26■■□□□ 1.47
SHKBP1-227ENST00000602011 KIAA1551Q9HCM1 1747 aa24.25■■□□□ 1.47
SHKBP1-227ENST00000602011 A0A0G2JLW4 131 aa24.25■■□□□ 1.47
SHKBP1-227ENST00000602011 KIF3CO14782 793 aa24.25■■□□□ 1.47
SHKBP1-227ENST00000602011 ARHGEF1Q92888 912 aaKnown RBP24.25■■□□□ 1.47
SHKBP1-227ENST00000602011 IL13P35225 146 aa24.24■■□□□ 1.47
SHKBP1-227ENST00000602011 BCS1LQ9Y276 419 aa24.24■■□□□ 1.47
SHKBP1-227ENST00000602011 NFATC2IPQ8NCF5 419 aa24.23■■□□□ 1.47
SHKBP1-227ENST00000602011 ZNF831Q5JPB2 1677 aa24.23■■□□□ 1.47
SHKBP1-227ENST00000602011 CCDC87Q9NVE4 849 aa24.22■■□□□ 1.47
SHKBP1-227ENST00000602011 AKAP4Q5JQC9 854 aa24.21■■□□□ 1.47
SHKBP1-227ENST00000602011 AMER1Q5JTC6 1135 aaPredicted RBP24.21■■□□□ 1.47
SHKBP1-227ENST00000602011 AEBP1Q8IUX7 1158 aa24.21■■□□□ 1.47
SHKBP1-227ENST00000602011 KIF13BQ9NQT8 1826 aa24.21■■□□□ 1.47
SHKBP1-227ENST00000602011 KDM6AO15550 1401 aaPredicted RBP24.2■■□□□ 1.46
SHKBP1-227ENST00000602011 DPEP1P16444 411 aa24.2■■□□□ 1.46
SHKBP1-227ENST00000602011 PARP3Q9Y6F1 533 aa24.2■■□□□ 1.46
SHKBP1-227ENST00000602011 C10orf71Q711Q0 1435 aa24.19■■□□□ 1.46
SHKBP1-227ENST00000602011 GYS1P13807 737 aa24.19■■□□□ 1.46
SHKBP1-227ENST00000602011 COL5A3P25940 1745 aaPredicted RBP24.18■■□□□ 1.46
SHKBP1-227ENST00000602011 PTCD1O75127 700 aaKnown RBP24.18■■□□□ 1.46
SHKBP1-227ENST00000602011 ARHGAP27Q6ZUM4 889 aa24.18■■□□□ 1.46
SHKBP1-227ENST00000602011 MYH14Q7Z406 1995 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-227ENST00000602011 C4AP0C0L4 1744 aa24.16■■□□□ 1.46
SHKBP1-227ENST00000602011 FCHSD2O94868 740 aa24.15■■□□□ 1.46
SHKBP1-227ENST00000602011 CRKLP46109 303 aaKnown RBP24.15■■□□□ 1.46
SHKBP1-227ENST00000602011 SRP68Q9UHB9 627 aaKnown RBP24.15■■□□□ 1.46
SHKBP1-227ENST00000602011 SLC52A2Q9HAB3 445 aa24.14■■□□□ 1.45
SHKBP1-227ENST00000602011 NMRK2Q9NPI5 230 aa24.14■■□□□ 1.45
SHKBP1-227ENST00000602011 KIF7Q2M1P5 1343 aa24.12■■□□□ 1.45
SHKBP1-227ENST00000602011 PER1O15534 1290 aaPredicted RBP24.12■■□□□ 1.45
SHKBP1-227ENST00000602011 KCNA3P22001 575 aa24.12■■□□□ 1.45
SHKBP1-227ENST00000602011 DIAPH1O60610 1272 aaKnown RBP24.11■■□□□ 1.45
SHKBP1-227ENST00000602011 FKBP8Q14318 412 aa24.1■■□□□ 1.45
SHKBP1-227ENST00000602011 BRCA1P38398 1863 aaKnown RBP24.1■■□□□ 1.45
SHKBP1-227ENST00000602011 USP42Q9H9J4 1324 aaKnown RBP24.1■■□□□ 1.45
SHKBP1-227ENST00000602011 RNMTO43148 476 aaKnown RBP24.09■■□□□ 1.45
SHKBP1-227ENST00000602011 ZPR1O75312 459 aa24.09■■□□□ 1.45
SHKBP1-227ENST00000602011 DDR1Q08345 913 aa24.09■■□□□ 1.45
SHKBP1-227ENST00000602011 VSIG10Q8N0Z9 540 aa24.09■■□□□ 1.45
SHKBP1-227ENST00000602011 PIM2Q9P1W9 311 aa24.09■■□□□ 1.45
SHKBP1-227ENST00000602011 C9orf131Q5VYM1 1079 aa24.08■■□□□ 1.45
SHKBP1-227ENST00000602011 INTS5Q6P9B9 1019 aaKnown RBP24.08■■□□□ 1.45
SHKBP1-227ENST00000602011 NPC1L1Q9UHC9 1359 aa24.07■■□□□ 1.44
SHKBP1-227ENST00000602011 TOMM70O94826 608 aa24.07■■□□□ 1.44
SHKBP1-227ENST00000602011 LGR6Q9HBX8 967 aa24.07■■□□□ 1.44
SHKBP1-227ENST00000602011 TJP1Q07157 1748 aa24.07■■□□□ 1.44
SHKBP1-227ENST00000602011 CHRNA5P30532 468 aa24.06■■□□□ 1.44
SHKBP1-227ENST00000602011 HMOX1P09601 288 aa24.05■■□□□ 1.44
SHKBP1-227ENST00000602011 TM4SF1P30408 202 aa24.05■■□□□ 1.44
SHKBP1-227ENST00000602011 APLP1P51693 650 aa24.05■■□□□ 1.44
SHKBP1-227ENST00000602011 CYP19A1P11511 503 aaPredicted RBP24.04■■□□□ 1.44
SHKBP1-227ENST00000602011 MTHFSDQ2M296 383 aaKnown RBP24.04■■□□□ 1.44
SHKBP1-227ENST00000602011 DALRD3Q5D0E6 543 aaKnown RBP24.04■■□□□ 1.44
SHKBP1-227ENST00000602011 DNAJC10Q8IXB1 793 aa24.04■■□□□ 1.44
SHKBP1-227ENST00000602011 HTRA3P83110 453 aa24.03■■□□□ 1.44
SHKBP1-227ENST00000602011 DNAJC5GQ8N7S2 189 aa24.03■■□□□ 1.44
SHKBP1-227ENST00000602011 NARFQ9UHQ1 456 aa24.03■■□□□ 1.44
SHKBP1-227ENST00000602011 ARFGEF1Q9Y6D6 1849 aa24.03■■□□□ 1.44
SHKBP1-227ENST00000602011 CC2D1BQ5T0F9 858 aaKnown RBP24.02■■□□□ 1.44
SHKBP1-227ENST00000602011 TEX13AQ9BXU3 409 aaPredicted RBP24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms