RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 DISP2A7MBM2 1401 aa23.07■■□□□ 1.28
VRK3-225ENST00000601912 SPATA31A5Q5VU36 1347 aa23.07■■□□□ 1.28
VRK3-225ENST00000601912 SPATA31A7Q8IWB4 1347 aa23.07■■□□□ 1.28
VRK3-225ENST00000601912 IPO8O15397 1037 aaKnown RBP23.06■■□□□ 1.28
VRK3-225ENST00000601912 MEX3CQ5U5Q3 659 aaKnown RBP23.06■■□□□ 1.28
VRK3-225ENST00000601912 ZKSCAN2Q63HK3 967 aa23.06■■□□□ 1.28
VRK3-225ENST00000601912 MS4A1P11836 297 aa23.06■■□□□ 1.28
VRK3-225ENST00000601912 NKX1-1Q15270 411 aaPredicted RBP23.06■■□□□ 1.28
VRK3-225ENST00000601912 C20orf194Q5TEA3 1177 aa23.06■■□□□ 1.28
VRK3-225ENST00000601912 FNBP4Q8N3X1 1017 aaPredicted RBP23.06■■□□□ 1.28
VRK3-225ENST00000601912 LRP6O75581 1613 aa23.05■■□□□ 1.28
VRK3-225ENST00000601912 EXOC5O00471 708 aa23.04■■□□□ 1.28
VRK3-225ENST00000601912 EXOC6Q8TAG9 804 aa23.04■■□□□ 1.28
VRK3-225ENST00000601912 CABP4P57796 275 aa23.03■■□□□ 1.28
VRK3-225ENST00000601912 MRPL50Q8N5N7 158 aaKnown RBP23.03■■□□□ 1.28
VRK3-225ENST00000601912 NFATC2IPQ8NCF5 419 aa23.03■■□□□ 1.28
VRK3-225ENST00000601912 CRBNQ96SW2 442 aa23.03■■□□□ 1.28
VRK3-225ENST00000601912 CHMP4AQ9BY43 222 aa23.03■■□□□ 1.28
VRK3-225ENST00000601912 ERVV-2B6SEH9 535 aa23.03■■□□□ 1.28
VRK3-225ENST00000601912 EIF4A1P60842 406 aaKnown RBP23.03■■□□□ 1.28
VRK3-225ENST00000601912 NOB1Q9ULX3 412 aaKnown RBP23.03■■□□□ 1.28
VRK3-225ENST00000601912 KDM3BQ7LBC6 1761 aa23.02■■□□□ 1.28
VRK3-225ENST00000601912 VPS72Q15906 364 aa23.02■■□□□ 1.28
VRK3-225ENST00000601912 BARGINQ6ZT62 677 aa23.02■■□□□ 1.28
VRK3-225ENST00000601912 BCL9LQ86UU0 1499 aa23.02■■□□□ 1.28
VRK3-225ENST00000601912 SIPA1L3O60292 1781 aaPredicted RBP23.01■■□□□ 1.27
VRK3-225ENST00000601912 USP21Q9UK80 565 aa23.01■■□□□ 1.27
VRK3-225ENST00000601912 MRC1P22897 1456 aa23.01■■□□□ 1.27
VRK3-225ENST00000601912 HOXB7P09629 217 aa23■■□□□ 1.27
VRK3-225ENST00000601912 ATF7IPQ6VMQ6 1270 aa23■■□□□ 1.27
VRK3-225ENST00000601912 FTSJ3Q8IY81 847 aaKnown RBP23■■□□□ 1.27
VRK3-225ENST00000601912 SHANK3Q9BYB0 1731 aa23■■□□□ 1.27
VRK3-225ENST00000601912 TCERG1O14776 1098 aaKnown RBP23■■□□□ 1.27
VRK3-225ENST00000601912 KCNQ3O43525 872 aa23■■□□□ 1.27
VRK3-225ENST00000601912 CCDC30Q5VVM6 783 aa23■■□□□ 1.27
VRK3-225ENST00000601912 ARHGAP45Q92619 1136 aa23■■□□□ 1.27
VRK3-225ENST00000601912 WNK3Q9BYP7 1800 aa22.99■■□□□ 1.27
VRK3-225ENST00000601912 ZNF790Q6PG37 636 aa22.99■■□□□ 1.27
VRK3-225ENST00000601912 DZIP1LQ8IYY4 767 aaKnown RBP22.99■■□□□ 1.27
VRK3-225ENST00000601912 DDB1Q16531 1140 aa22.98■■□□□ 1.27
VRK3-225ENST00000601912 PANK1Q8TE04 598 aa22.98■■□□□ 1.27
VRK3-225ENST00000601912 STK31Q9BXU1 1019 aa22.98■■□□□ 1.27
VRK3-225ENST00000601912 TRIM27P14373 513 aa22.97■■□□□ 1.27
VRK3-225ENST00000601912 TTC5Q8N0Z6 440 aa22.97■■□□□ 1.27
VRK3-225ENST00000601912 TNS2Q63HR2 1409 aa22.97■■□□□ 1.27
VRK3-225ENST00000601912 CLUAP1Q96AJ1 413 aa22.97■■□□□ 1.27
VRK3-225ENST00000601912 SLC4A2P04920 1241 aa22.95■■□□□ 1.26
VRK3-225ENST00000601912 HDGFL1Q5TGJ6 251 aa22.95■■□□□ 1.26
VRK3-225ENST00000601912 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.94■■□□□ 1.26
VRK3-225ENST00000601912 SLC39A6Q13433 755 aa22.94■■□□□ 1.26
VRK3-225ENST00000601912 CCDC136Q96JN2 1154 aa22.94■■□□□ 1.26
VRK3-225ENST00000601912 API5Q9BZZ5 524 aaKnown RBP22.94■■□□□ 1.26
VRK3-225ENST00000601912 COG6Q9Y2V7 657 aa22.94■■□□□ 1.26
VRK3-225ENST00000601912 RLBP1P12271 317 aa22.93■■□□□ 1.26
VRK3-225ENST00000601912 TNNQ9UQP3 1299 aa22.93■■□□□ 1.26
VRK3-225ENST00000601912 AFF2P51816 1311 aa22.93■■□□□ 1.26
VRK3-225ENST00000601912 HEG1Q9ULI3 1381 aa22.93■■□□□ 1.26
VRK3-225ENST00000601912 GIGYF1O75420 1035 aaPredicted RBP22.93■■□□□ 1.26
VRK3-225ENST00000601912 PTPRCP08575 1304 aa22.93■■□□□ 1.26
VRK3-225ENST00000601912 FAM98CQ17RN3 349 aaKnown RBP22.92■■□□□ 1.26
VRK3-225ENST00000601912 TMOD3Q9NYL9 352 aa22.92■■□□□ 1.26
VRK3-225ENST00000601912 EIF2S2P20042 333 aaKnown RBP22.91■■□□□ 1.26
VRK3-225ENST00000601912 AAMPQ13685 434 aa22.91■■□□□ 1.26
VRK3-225ENST00000601912 B4GALNT3Q6L9W6 998 aa22.91■■□□□ 1.26
VRK3-225ENST00000601912 NECTIN2Q92692 538 aa22.91■■□□□ 1.26
VRK3-225ENST00000601912 FMNL2Q96PY5 1086 aa22.91■■□□□ 1.26
VRK3-225ENST00000601912 MVPQ14764 893 aaKnown RBP22.9■■□□□ 1.26
VRK3-225ENST00000601912 ZNF496Q96IT1 587 aaPredicted RBP22.89■■□□□ 1.25
VRK3-225ENST00000601912 TRPC5Q9UL62 973 aaPredicted RBP22.88■■□□□ 1.25
VRK3-225ENST00000601912 CACNA1FO60840 1977 aa22.88■■□□□ 1.25
VRK3-225ENST00000601912 SNRPA1P09661 255 aaKnown RBP22.87■■□□□ 1.25
VRK3-225ENST00000601912 ITPRIPQ8IWB1 547 aa22.87■■□□□ 1.25
VRK3-225ENST00000601912 GJD4Q96KN9 370 aaPredicted RBP22.87■■□□□ 1.25
VRK3-225ENST00000601912 DDX19BQ9UMR2 479 aa22.87■■□□□ 1.25
VRK3-225ENST00000601912 A0A0G2JS52 829 aa22.87■■□□□ 1.25
VRK3-225ENST00000601912 MYT1Q01538 1121 aa22.87■■□□□ 1.25
VRK3-225ENST00000601912 TMEM57Q8N5G2 664 aa22.87■■□□□ 1.25
VRK3-225ENST00000601912 TOGARAM1Q9Y4F4 1720 aa22.86■■□□□ 1.25
VRK3-225ENST00000601912 DBF4Q9UBU7 674 aaPredicted RBP22.86■■□□□ 1.25
VRK3-225ENST00000601912 ABCC4O15439 1325 aa22.85■■□□□ 1.25
VRK3-225ENST00000601912 MARCH10Q8NA82 808 aaPredicted RBP22.85■■□□□ 1.25
VRK3-225ENST00000601912 CHMP4BQ9H444 224 aaKnown RBP22.85■■□□□ 1.25
VRK3-225ENST00000601912 FLIIQ13045 1269 aa22.84■■□□□ 1.25
VRK3-225ENST00000601912 PIGBQ92521 554 aa22.84■■□□□ 1.25
VRK3-225ENST00000601912 G2E3Q7L622 706 aa22.84■■□□□ 1.25
VRK3-225ENST00000601912 CHPF2Q9P2E5 772 aa22.84■■□□□ 1.25
VRK3-225ENST00000601912 ATRNO75882 1429 aa22.83■■□□□ 1.25
VRK3-225ENST00000601912 PRAMEF22A3QJZ6 481 aa22.83■■□□□ 1.24
VRK3-225ENST00000601912 SYTL4Q96C24 671 aaPredicted RBP22.83■■□□□ 1.24
VRK3-225ENST00000601912 FKBP5Q13451 457 aaPredicted RBP22.82■■□□□ 1.24
VRK3-225ENST00000601912 BCL9O00512 1426 aa22.82■■□□□ 1.24
VRK3-225ENST00000601912 PRIM1P49642 420 aaKnown RBP22.81■■□□□ 1.24
VRK3-225ENST00000601912 KAT6BQ8WYB5 2073 aa22.81■■□□□ 1.24
VRK3-225ENST00000601912 PAPPAQ13219 1627 aa22.81■■□□□ 1.24
VRK3-225ENST00000601912 QTRT2Q9H974 415 aaKnown RBP22.81■■□□□ 1.24
VRK3-225ENST00000601912 ITGB4P16144 1822 aa22.8■■□□□ 1.24
VRK3-225ENST00000601912 HYPKQ9NX55 129 aa22.8■■□□□ 1.24
VRK3-225ENST00000601912 PTCD1O75127 700 aaKnown RBP22.79■■□□□ 1.24
VRK3-225ENST00000601912 INTS3Q68E01 1043 aaKnown RBP22.79■■□□□ 1.24
VRK3-225ENST00000601912 DDX21Q9NR30 783 aaKnown RBP eCLIP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms