RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 FAM196BA6NMK8 535 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 MAN1A2O60476 641 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 DKK1O94907 266 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 SIX5Q8N196 739 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 RNF217Q8TC41 542 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 PBXIP1Q96AQ6 731 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 SLC4A9Q96Q91 983 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 GRIP2Q9C0E4 1043 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 SERTAD1Q9UHV2 236 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 DNMT3LQ9UJW3 386 aa7.01□□□□□ -1.29
CKS1BP3-201ENST00000600888 SOBPA7XYQ1 873 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L15C9J2P7 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L10C9JJH3 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L13C9JLJ4 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L12C9JPN9 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L11C9JVI0 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L21D6R901 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L18D6R9N7 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L22D6RA61 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L17D6RBQ6 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L19D6RCP7 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L20D6RJB6 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 BACH1O14867 736 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 USP17L24Q0WX57 530 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 SLC27A3Q5K4L6 730 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 PRICKLE2Q7Z3G6 844 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 ZNF358Q9NW07 568 aa7□□□□□ -1.29
CKS1BP3-201ENST00000600888 RBM19Q9Y4C8 960 aaKnown RBP7□□□□□ -1.29
CKS1BP3-201ENST00000600888 SFI1A8K8P3 1242 aa6.99□□□□□ -1.29
CKS1BP3-201ENST00000600888 SMTNP53814 917 aa6.99□□□□□ -1.29
CKS1BP3-201ENST00000600888 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.99□□□□□ -1.29
CKS1BP3-201ENST00000600888 LYSMD3Q7Z3D4 306 aa6.99□□□□□ -1.29
CKS1BP3-201ENST00000600888 ANKMY2Q8IV38 441 aa6.99□□□□□ -1.29
CKS1BP3-201ENST00000600888 FHDC1Q9C0D6 1143 aaPredicted RBP6.99□□□□□ -1.29
CKS1BP3-201ENST00000600888 A6NJY4 79 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 PPP1R15AO75807 674 aaPredicted RBP6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 ATG7O95352 703 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 SEC13P55735 322 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 DPYDQ12882 1025 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 TLR1Q15399 786 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 ARXQ96QS3 562 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 ZSCAN10Q96SZ4 725 aaPredicted RBP6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 RB1CC1Q8TDY2 1594 aa6.98□□□□□ -1.29
CKS1BP3-201ENST00000600888 M0R2N6 131 aa6.97□□□□□ -1.29
CKS1BP3-201ENST00000600888 POU4F2Q12837 409 aa6.97□□□□□ -1.29
CKS1BP3-201ENST00000600888 ELOAQ14241 798 aaKnown RBP6.97□□□□□ -1.29
CKS1BP3-201ENST00000600888 MTFR1Q15390 333 aa6.97□□□□□ -1.29
CKS1BP3-201ENST00000600888 FAM200AQ8TCP9 573 aa6.97□□□□□ -1.29
CKS1BP3-201ENST00000600888 NOVA2Q9UNW9 492 aaKnown RBP6.97□□□□□ -1.29
CKS1BP3-201ENST00000600888 NACADO15069 1562 aa6.96□□□□□ -1.29
CKS1BP3-201ENST00000600888 SPATA31C2B4DYI2 1134 aa6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 CDK2AP1O14519 115 aa6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 EPHA4P54764 986 aa6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 TMEM214Q6NUQ4 689 aaKnown RBP6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 PPARGC1BQ86YN6 1023 aaKnown RBP6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 TNS4Q8IZW8 715 aa6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 ACIN1Q9UKV3 1341 aaKnown RBP6.96□□□□□ -1.3
CKS1BP3-201ENST00000600888 RHOQP17081 205 aa6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 GTF2E1P29083 439 aaPredicted RBP6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 NBPF10Q6P3W6 841 aaKnown RBP6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 NBPF15Q8N660 670 aa6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 TSEN2Q8NCE0 465 aaKnown RBP6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 SCHIP1Q9P0W5 487 aaPredicted RBP6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 ZMIZ1Q9ULJ6 1067 aa6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 IQSEC3Q9UPP2 1182 aaPredicted RBP6.95□□□□□ -1.3
CKS1BP3-201ENST00000600888 FOXK2Q01167 660 aa6.94□□□□□ -1.3
CKS1BP3-201ENST00000600888 PTSQ03393 145 aa6.94□□□□□ -1.3
CKS1BP3-201ENST00000600888 WDR44Q5JSH3 913 aa6.94□□□□□ -1.3
CKS1BP3-201ENST00000600888 GNASQ5JWF2 1037 aa6.94□□□□□ -1.3
CKS1BP3-201ENST00000600888 TAS1R3Q7RTX0 852 aa6.94□□□□□ -1.3
CKS1BP3-201ENST00000600888 HINFPQ9BQA5 517 aa6.94□□□□□ -1.3
CKS1BP3-201ENST00000600888 MYO15BQ96JP2 1530 aa6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 SLC35F4A4IF30 521 aa6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 C4orf17Q53FE4 359 aa6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 RHBDD1Q8TEB9 315 aa6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 STK32AQ8WU08 396 aa6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 NIFKQ9BYG3 293 aaKnown RBP6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 USP3Q9Y6I4 520 aa6.93□□□□□ -1.3
CKS1BP3-201ENST00000600888 SENP3-EIF4A1A0A087X0R7 540 aa6.92□□□□□ -1.3
CKS1BP3-201ENST00000600888 PHKA2P46019 1235 aa6.92□□□□□ -1.3
CKS1BP3-201ENST00000600888 SLC9A9Q8IVB4 645 aa6.92□□□□□ -1.3
CKS1BP3-201ENST00000600888 ZNF295-AS1Q8N0V1 137 aa6.92□□□□□ -1.3
CKS1BP3-201ENST00000600888 LGR5O75473 907 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 FAM69CQ0P6D2 419 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 TBCELQ5QJ74 424 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 TMEM164Q5U3C3 297 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 CCDC155Q8N6L0 562 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 TSPAN10Q9H1Z9 355 aaPredicted RBP6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 TIMMDC1Q9NPL8 285 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 CABP1Q9NZU7 370 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 NXF1Q9UBU9 619 aaKnown RBP6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 ATAD2Q6PL18 1390 aa6.91□□□□□ -1.3
CKS1BP3-201ENST00000600888 C21orf2O43822 256 aa6.9□□□□□ -1.3
CKS1BP3-201ENST00000600888 TEAD4Q15561 434 aa6.9□□□□□ -1.3
CKS1BP3-201ENST00000600888 DYRK1BQ9Y463 629 aa6.9□□□□□ -1.3
CKS1BP3-201ENST00000600888 PPFIA3O75145 1194 aa6.89□□□□□ -1.31
CKS1BP3-201ENST00000600888 NOS2P35228 1153 aa6.89□□□□□ -1.31
CKS1BP3-201ENST00000600888 PLA2G4AP47712 749 aa6.89□□□□□ -1.31
CKS1BP3-201ENST00000600888 SWI5Q1ZZU3 235 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms